Search Results - "Rodriguez-Rivas J"

Mind the gap: An embedding guide to safely travel in sequence space.

Authors: Wu, Adam Lála, Jakub Trolliet, Quentin et al.

Source: PLoS Computational Biology. 7/9/2026, Vol. 22 Issue 7, p1-27. 27p.

D-LIM: A neural network for interpretable gene–gene interactions.

Authors: Wang, Shuhui Allauzen, Alexandre Nghe, Philippe et al.

Source: PLoS Computational Biology. 3/23/2026, Vol. 22 Issue 3, p1-22. 22p.

Functional bottlenecks can emerge from non-epistatic underlying traits.

Authors: Schulte, Anna Ottavia Alqatari, Samar Rossi, Saverio et al.

Source: PLoS Computational Biology. 3/16/2026, Vol. 22 Issue 3, p1-20. 20p.

Human herpesvirus 6B glycoprotein B postfusion structure, vulnerability mapping, and receptor recognition.

Authors: Xie, Chu Fang, Xin-Yan Liu, Yuan-Tao et al.

Source: PLoS Pathogens. 7/9/2025, Vol. 21 Issue 7, p1-26. 26p.

Impact of phylogeny on the inference of functional sectors from protein sequence data.

Authors: Dietler, Nicola Abbara, Alia Choudhury, Subham et al.

Source: PLoS Computational Biology. 9/23/2024, Vol. 20 Issue 9, p1-25. 25p.

Inference of annealed protein fitness landscapes with AnnealDCA.

Authors: Sesta, Luca Pagnani, Andrea Fernandez-de-Cossio-Diaz, Jorge et al.

Source: PLoS Computational Biology. 2/20/2024, Vol. 20 Issue 2, p1-16. 16p.

Mapping the Evolutionary Space of SARS-CoV-2 Variants to Anticipate Emergence of Subvariants Resistant to COVID-19 Therapeutics.

Authors: Rojas Chávez, Roberth Anthony Fili, Mohammad Han, Changze et al.

Source: PLoS Computational Biology. 6/10/2024, Vol. 20 Issue 6, p1-33. 33p.

Known allosteric proteins have central roles in genetic disease.

Authors: Abrusán, György Ascher, David B. Inouye, Michael

Source: PLoS Computational Biology. 2/9/2022, Vol. 18 Issue 2, p1-28. 28p. 1 Diagram, 6 Graphs.

Knowledge-guided data mining on the standardized architecture of NRPS: Subtypes, novel motifs, and sequence entanglements.

Authors: He, Ruolin Zhang, Jinyu Shao, Yuanzhe et al.

Source: PLoS Computational Biology. 5/15/2023, Vol. 19 Issue 5, p1-42. 42p. 4 Diagrams, 1 Chart, 3 Graphs.

Identification of gene networks mediating regional resistance to tauopathy in late-onset Alzheimer's disease.

Authors: Ayoub, Christopher A. Wagner, Connor S. Kuret, Jeff

Source: PLoS Genetics. 3/27/2023, Vol. 18 Issue 3, p1-26. 26p.

Inferring protein fitness landscapes from laboratory evolution experiments.

Authors: D'Costa, Sameer Hinds, Emily C. Freschlin, Chase R. et al.

Source: PLoS Computational Biology. 3/1/2023, Vol. 19 Issue 3, p1-21. 21p. 3 Diagrams, 1 Graph.

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Generative and interpretable machine learning for aptamer design and analysis of in vitro sequence selection.

Authors: Di Gioacchino, Andrea Procyk, Jonah Molari, Marco et al.

Source: PLoS Computational Biology. 9/29/2022, Vol. 18 Issue 9, p1-31. 31p. 2 Black and White Photographs, 2 Diagrams, 1 Chart, 5 Graphs.

Targeting YRDC blocks codon-biased FABP7 translation and lipid droplet formation to overcome chemoresistance in glioblastoma.

Authors: Zhang Y Yang X Li X et al.

Source: Oncogene [Oncogene] 2026 Jun; Vol. 45 (22), pp. 2155-2170. Date of Electronic Publication: 2026 Apr 21.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 8711562 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-5594 (Electronic) Linking ISSN: 09509232 NLM ISO Abbreviation: Oncogene Subsets: MEDLINE

Bridging technical innovation and computational advances in studies of RNA-protein assemblies.

Authors: Ducoli L Srinivasan S Amjadi E et al.

Source: Nature reviews. Genetics [Nat Rev Genet] 2026 Jun; Vol. 27 (6), pp. 462-484. Date of Electronic Publication: 2026 Feb 16.

Publication Type: Journal Article; Review

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 100962779 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1471-0064 (Electronic) Linking ISSN: 14710056 NLM ISO Abbreviation: Nat Rev Genet Subsets: MEDLINE

The Role of Small Segmental Duplications in Generating Identical Isoforms Through Alternative Splicing Sites.

Authors: Huseynova Mustafayeva U Babayeva S Mustafayev O et al.

Source: Biochemical genetics [Biochem Genet] 2026 May 28. Date of Electronic Publication: 2026 May 28.

Publication Type: Journal Article

Journal Info: Publisher: Kluwer Academic/Plenum Publishers Country of Publication: United States NLM ID: 0126611 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1573-4927 (Electronic) Linking ISSN: 00062928 NLM ISO Abbreviation: Biochem Genet Subsets: MEDLINE

In silico prediction of HIV-1-host molecular interactions and their directionality.

Authors: Chai, Haiting Gu, Quan Hughes, Joseph et al.

Source: PLoS Computational Biology. 2/8/2022, Vol. 18 Issue 2, p1-26. 26p. 1 Color Photograph, 5 Charts, 4 Graphs.

Evolutionary Mechanisms of the Emergence of the Variants of Concern of SARS-CoV-2.

Authors: Rouzine, Igor M.¹ (AUTHOR)

Source: Viruses (1999-4915). Feb2025, Vol. 17 Issue 2, p197. 12p.

Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes.

Authors: Rodriguez-Rivas J Croce G Muscat M et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2022 Jan 25; Vol. 119 (4).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE

Biological impact of mutually exclusive exon switching.

Authors: Lam, Su Datt Babu, M. Madan Lees, Jonathan et al.

Source: PLoS Computational Biology. 3/2/2021, Vol. 17 Issue 3, p1-29. 29p. 1 Color Photograph, 5 Graphs.