Search Results - "Roterman I"

Two-intermediate model to characterize the structure of fast-folding proteins

Authors: Roterman, I. Konieczny, L. Jurkowski, W. et al.

Source: Journal of Theoretical Biology. Aug2011, Vol. 283 Issue 1, p60-70. 11p.

Subjects: Mathematical models, Protein structure, Protein folding, Information theory, Simulation methods & models, Entropy, Peptides

Why do antifreeze proteins require a solenoid?

Authors: Banach, M. Konieczny, L. Roterman, I.

Source: Biochimie. Jan2018, Vol. 144, p74-84. 11p.

Chameleon sequences reveal structural effects in proteins representing micelle-like distribution of hydrophobicity.

Authors: Roterman I Stapor K Konieczny L et al.

Source: FEBS open bio [FEBS Open Bio] 2026 Jul; Vol. 16 (7), pp. 1340-1357. Date of Electronic Publication: 2026 Feb 17.

Publication Type: Journal Article

Journal Info: Publisher: John Wiley & Sons Ltd Country of Publication: England NLM ID: 101580716 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-5463 (Electronic) Linking ISSN: 22115463 NLM ISO Abbreviation: FEBS Open Bio Subsets: MEDLINE

Life - A glimpse into the phenomenon.

Authors: Konieczny L Roterman I Spolnik P

Source: Bioinformation [Bioinformation] 2026 Mar 31; Vol. 22 (3), pp. 1871-1880. Date of Electronic Publication: 2026 Mar 31 (Print Publication: 2026).

Publication Type: Editorial

Journal Info: Publisher: Biomedical Informatics Pub. Group Country of Publication: Singapore NLM ID: 101258255 Publication Model: eCollection Cited Medium: Print ISSN: 0973-2063 (Print) Linking ISSN: 09732063 NLM ISO Abbreviation: Bioinformation Subsets: PubMed not MEDLINE

Chameleon sequences-Structural effects.

Authors: Slupina M Stapor K Konieczny L et al.

Source: PloS one [PLoS One] 2025 Apr 22; Vol. 20 (4), pp. e0315901. Date of Electronic Publication: 2025 Apr 22 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Aquaporins as Membrane Proteins: The Current Status.

Authors: Roterman I Stapor K Dułak D et al.

Source: Frontiers in bioscience (Scholar edition) [Front Biosci (Schol Ed)] 2025 Mar 20; Vol. 17 (1), pp. 27967.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: IMR Press Country of Publication: Singapore NLM ID: 101485241 Publication Model: Print Cited Medium: Internet ISSN: 1945-0524 (Electronic) Linking ISSN: 19450516 NLM ISO Abbreviation: Front Biosci (Schol Ed) Subsets: MEDLINE

Domain swapping: a mathematical model for quantitative assessment of structural effects.

Authors: Roterman I Stapor K Dułak D et al.

Source: FEBS open bio [FEBS Open Bio] 2024 Dec; Vol. 14 (12), pp. 2006-2025. Date of Electronic Publication: 2024 Oct 06.

Publication Type: Journal Article

Journal Info: Publisher: John Wiley & Sons Ltd Country of Publication: England NLM ID: 101580716 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-5463 (Electronic) Linking ISSN: 22115463 NLM ISO Abbreviation: FEBS Open Bio Subsets: MEDLINE

Activity of Serpins in Context to Hydrophobic Interaction.

Authors: Roterman I Stapor K Zemanek G et al.

Source: Biomolecules [Biomolecules] 2025 Nov 18; Vol. 15 (11). Date of Electronic Publication: 2025 Nov 18.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101596414 Publication Model: Electronic Cited Medium: Internet ISSN: 2218-273X (Electronic) Linking ISSN: 2218273X NLM ISO Abbreviation: Biomolecules Subsets: MEDLINE

Transmembrane proteins-Different anchoring systems.

Authors: Roterman I Stapor K Konieczny L

Source: Proteins [Proteins] 2024 May; Vol. 92 (5), pp. 593-609. Date of Electronic Publication: 2023 Dec 07.

Publication Type: Journal Article

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

Role of environmental specificity in CASP results.

Authors: Roterman I Stapor K Konieczny L

Source: BMC bioinformatics [BMC Bioinformatics] 2023 Nov 11; Vol. 24 (1), pp. 425. Date of Electronic Publication: 2023 Nov 11.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Ab initio protein structure prediction: the necessary presence of external force field as it is delivered by Hsp40 chaperone.

Authors: Roterman I Stapor K Konieczny L

Source: BMC bioinformatics [BMC Bioinformatics] 2023 Nov 07; Vol. 24 (1), pp. 418. Date of Electronic Publication: 2023 Nov 07.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Heat Shock Protein and Disaggregase Influencing the Casein Structuralisation.

Authors: Roterman I Stapor K Dułak D et al.

Source: International journal of molecular sciences [Int J Mol Sci] 2025 Jul 01; Vol. 26 (13). Date of Electronic Publication: 2025 Jul 01.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101092791 Publication Model: Electronic Cited Medium: Internet ISSN: 1422-0067 (Electronic) Linking ISSN: 14220067 NLM ISO Abbreviation: Int J Mol Sci Subsets: MEDLINE

Secondary structure in polymorphic forms of alpha-synuclein amyloids.

Authors: Roterman I Stapor K Dułak D et al.

Source: Acta biochimica Polonica [Acta Biochim Pol] 2023 Jun 18; Vol. 70 (2), pp. 435-445.

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Media S.A Country of Publication: Switzerland NLM ID: 14520300R Publication Model: Print Cited Medium: Internet ISSN: 1734-154X (Electronic) Linking ISSN: 0001527X NLM ISO Abbreviation: Acta Biochim Pol Subsets: MEDLINE

New insights on the catalytic center of proteins from peptidylprolyl isomerase group based on the FOD-M model.

Authors: Roterman I Stapor K Konieczny L

Source: Journal of cellular biochemistry [J Cell Biochem] 2023 Jun; Vol. 124 (6), pp. 818-835. Date of Electronic Publication: 2023 May 04.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8205768 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4644 (Electronic) Linking ISSN: 07302312 NLM ISO Abbreviation: J Cell Biochem Subsets: MEDLINE

Convolutional ProteinUnetLM competitive with long short-term memory-based protein secondary structure predictors.

Authors: Kotowski K Fabian P Roterman I et al.

Source: Proteins [Proteins] 2023 May; Vol. 91 (5), pp. 608-618. Date of Electronic Publication: 2022 Dec 05.

Publication Type: Journal Article

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 8700181 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-0134 (Electronic) Linking ISSN: 08873585 NLM ISO Abbreviation: Proteins Subsets: MEDLINE

Three scenarios for amyloid transformation in the context of the funnel model.

Authors: Roterman I Słupina M Dułak D et al.

Source: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2025 Apr 13; Vol. 27, pp. 1648-1659. Date of Electronic Publication: 2025 Apr 13 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology Country of Publication: Netherlands NLM ID: 101585369 Publication Model: eCollection Cited Medium: Print ISSN: 2001-0370 (Print) Linking ISSN: 20010370 NLM ISO Abbreviation: Comput Struct Biotechnol J Subsets: PubMed not MEDLINE

DisorderUnetLM: Validating ProteinUnet for efficient protein intrinsic disorder prediction.

Authors: Kotowski K Roterman I Stapor K

Source: Computers in biology and medicine [Comput Biol Med] 2025 Feb; Vol. 185, pp. 109586. Date of Electronic Publication: 2024 Dec 20.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 1250250 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0534 (Electronic) Linking ISSN: 00104825 NLM ISO Abbreviation: Comput Biol Med Subsets: MEDLINE

Structural Specificity of Polymorphic Forms of α-Synuclein Amyloid.

Authors: Roterman I Stapor K Konieczny L

Source: Biomedicines [Biomedicines] 2023 Apr 29; Vol. 11 (5). Date of Electronic Publication: 2023 Apr 29.

Publication Type: Journal Article

Journal Info: Publisher: MDPI AG Country of Publication: Switzerland NLM ID: 101691304 Publication Model: Electronic Cited Medium: Print ISSN: 2227-9059 (Print) Linking ISSN: 22279059 NLM ISO Abbreviation: Biomedicines Subsets: PubMed not MEDLINE

New insights into disordered proteins and regions according to the FOD-M model.

Authors: Roterman I Stapor K Fabian P et al.

Source: PloS one [PLoS One] 2022 Oct 10; Vol. 17 (10), pp. e0275300. Date of Electronic Publication: 2022 Oct 10 (Print Publication: 2022).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Connexins and Pannexins-Similarities and Differences According to the FOD-M Model.

Authors: Roterman I Stapor K Fabian P et al.

Source: Biomedicines [Biomedicines] 2022 Jun 25; Vol. 10 (7). Date of Electronic Publication: 2022 Jun 25.

Publication Type: Journal Article

Journal Info: Publisher: MDPI AG Country of Publication: Switzerland NLM ID: 101691304 Publication Model: Electronic Cited Medium: Print ISSN: 2227-9059 (Print) Linking ISSN: 22279059 NLM ISO Abbreviation: Biomedicines Subsets: PubMed not MEDLINE