Search Results - "Rozowsky JS"

Single-cell multi-omic analyses resolve the cellular diversity of ALK/ROS1/MET/NTRK-fused gliomas in infants and older children.

Authors: De Micheli AJ de Biagi-Junior COA Cascio CL et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 Jul 16. Date of Electronic Publication: 2026 Jul 16.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Author Correction: Multidimensional profiling of heterogeneity in supratentorial ependymomas.

Authors: Jeong D Danielli SG Maaß KK et al.

Source: Nature [Nature] 2026 May; Vol. 653 (8115), pp. E9.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; In Process

Toward mutational epidemiology: using mutational signatures of environmental exposures to assess cancer risk.

Authors: Sherman F Rozowsky JS Okafor A et al.

Source: Trends in cancer [Trends Cancer] 2026 May; Vol. 12 (5), pp. 393-403. Date of Electronic Publication: 2026 Apr 03.

Publication Type: Journal Article; Review

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101665956 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2405-8025 (Electronic) Linking ISSN: 24058025 NLM ISO Abbreviation: Trends Cancer Subsets: MEDLINE

Multidimensional profiling of heterogeneity in supratentorial ependymomas.

Authors: Jeong D Danielli SG Maaß KK et al.

Source: Nature [Nature] 2026 Apr; Vol. 652 (8111), pp. 1016-1026. Date of Electronic Publication: 2026 Mar 11.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Multimodal analysis of pediatric pilocytic astrocytomas reveals tumor location-associated cellular and transcriptional heterogeneity.

Authors: Lammers JAS Rozowsky JS Calkoen FG et al.

Source: Neuro-oncology [Neuro Oncol] 2025 Dec 01; Vol. 27 (12), pp. 3276-3291.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100887420 Publication Model: Print Cited Medium: Internet ISSN: 1523-5866 (Electronic) Linking ISSN: 15228517 NLM ISO Abbreviation: Neuro Oncol Subsets: MEDLINE

Dissecting the immune landscape in pediatric high-grade glioma reveals cell state changes under therapeutic pressure.

Authors: LaBelle JJ Haase RD Beck A et al.

Source: Cell reports. Medicine [Cell Rep Med] 2025 May 20; Vol. 6 (5), pp. 102095. Date of Electronic Publication: 2025 May 01.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101766894 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-3791 (Electronic) Linking ISSN: 26663791 NLM ISO Abbreviation: Cell Rep Med Subsets: MEDLINE

Effective targeting of PDGFRA-altered high-grade glioma with avapritinib.

Authors: Mayr L Neyazi S Schwark K et al.

Source: Cancer cell [Cancer Cell] 2025 Apr 14; Vol. 43 (4), pp. 740-756.e8. Date of Electronic Publication: 2025 Mar 13.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101130617 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1878-3686 (Electronic) Linking ISSN: 15356108 NLM ISO Abbreviation: Cancer Cell Subsets: MEDLINE

A Toolkit for Profiling the Immune Landscape of Pediatric Central Nervous System Malignancies.

Authors: Rozowsky JS Meesters-Ensing JI Lammers JAS et al.

Source: Frontiers in immunology [Front Immunol] 2022 Apr 07; Vol. 13, pp. 864423. Date of Electronic Publication: 2022 Apr 07 (Print Publication: 2022).

Publication Type: Journal Article; Review; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

Single-cell multidimensional profiling of tumor cell heterogeneity in supratentorial ependymomas.

Authors: Jeong D Danielli SG Maaß KK et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Aug 09. Date of Electronic Publication: 2024 Aug 09.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

APOBEC Mutagenesis in Cancer Development and Susceptibility.

Authors: Dananberg A Striepen J Rozowsky JS et al.

Source: Cancers [Cancers (Basel)] 2024 Jan 15; Vol. 16 (2). Date of Electronic Publication: 2024 Jan 15.

Publication Type: Journal Article

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101526829 Publication Model: Electronic Cited Medium: Print ISSN: 2072-6694 (Print) Linking ISSN: 20726694 NLM ISO Abbreviation: Cancers (Basel) Subsets: PubMed not MEDLINE

Neurooncology: 2022 update.

Authors: Wesseling P Rozowsky JS

Source: Free neuropathology [Free Neuropathol] 2022 Feb 24; Vol. 3, pp. 4. Date of Electronic Publication: 2022 Feb 24 (Print Publication: 2022).

Publication Type: Journal Article

Journal Info: Publisher: University of Muenster Country of Publication: Germany NLM ID: 101768755 Publication Model: eCollection Cited Medium: Internet ISSN: 2699-4445 (Electronic) Linking ISSN: 26994445 NLM ISO Abbreviation: Free Neuropathol Subsets: PubMed not MEDLINE

Decoding neuroproteomics: integrating the genome, translatome and functional anatomy.

Authors: Kitchen RR Rozowsky JS Gerstein MB et al.

Source: Nature neuroscience [Nat Neurosci] 2014 Nov; Vol. 17 (11), pp. 1491-9. Date of Electronic Publication: 2014 Oct 28.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Review

Journal Info: Publisher: Nature Publishing Group Country of Publication: United States NLM ID: 9809671 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1726 (Electronic) Linking ISSN: 10976256 NLM ISO Abbreviation: Nat Neurosci Subsets: MEDLINE

The reality of pervasive transcription.

Authors: Clark MB Amaral PP Schlesinger FJ et al.

Source: PLoS biology [PLoS Biol] 2011 Jul; Vol. 9 (7), pp. e1000625; discussion e1001102. Date of Electronic Publication: 2011 Jul 12.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

Assessing the need for sequence-based normalization in tiling microarray experiments.

Authors: Royce TE Rozowsky JS Gerstein MB

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2007 Apr 15; Vol. 23 (8), pp. 988-97. Date of Electronic Publication: 2007 Mar 25.

Publication Type: Evaluation Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.

Authors: Royce TE Rozowsky JS Gerstein MB

Source: Nucleic acids research [Nucleic Acids Res] 2007; Vol. 35 (15), pp. e99. Date of Electronic Publication: 2007 Aug 07.

Publication Type: Evaluation Study; Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge.

Authors: Du J Rozowsky JS Korbel JO et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2006 Dec 15; Vol. 22 (24), pp. 3016-24. Date of Electronic Publication: 2006 Oct 12.

Publication Type: Evaluation Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Validation Study

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Global identification of human transcribed sequences with genome tiling arrays.

Authors: Bertone P Stolc V Royce TE et al.

Source: Science (New York, N.Y.) [Science] 2004 Dec 24; Vol. 306 (5705), pp. 2242-6. Date of Electronic Publication: 2004 Nov 11.

Publication Type: Journal Article; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

Isoform-Level Interpretation of High-Throughput Proteomics Data Enabled by Deep Integration with RNA-seq.

Authors: Carlyle BC Kitchen RR Zhang J et al.

Source: Journal of proteome research [J Proteome Res] 2018 Oct 05; Vol. 17 (10), pp. 3431-3444. Date of Electronic Publication: 2018 Sep 06.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101128775 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1535-3907 (Electronic) Linking ISSN: 15353893 NLM ISO Abbreviation: J Proteome Res

Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.

Authors: Subramanian SL Kitchen RR Alexander R et al.

Source: Journal of extracellular vesicles [J Extracell Vesicles] 2015 Aug 28; Vol. 4, pp. 27497. Date of Electronic Publication: 2015 Aug 28 (Print Publication: 2015).

Publication Type: Journal Article

Journal Info: Publisher: Wiley Country of Publication: United States NLM ID: 101610479 Publication Model: eCollection Cited Medium: Print ISSN: 2001-3078 (Print) Linking ISSN: 20013078 NLM ISO Abbreviation: J Extracell Vesicles Subsets: PubMed not MEDLINE

FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data.

Authors: Sboner A Habegger L Pflueger D et al.

Source: Genome biology [Genome Biol] 2010; Vol. 11 (10), pp. R104. Date of Electronic Publication: 2010 Oct 21.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE