Search Results - "Samudrala, Ram"

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Accurate informatic modeling of tooth enamel pellicle interactions by training substitution matrices with Mat4Pep.

Authors: Keeper, Jeremy Horst Seto, Jong Oren, Ersin Emre et al.

Source: Frontiers in Materials; 2025, p1-11, 11p

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Enhanced functional information from predicted protein networks.

Authors: McDermott, Jason Samudrala, Ram

Source: Trends in Biotechnology; Feb2004, Vol. 22 Issue 2, p60-63, 4p

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The evolution and functional repertoire of translation proteins following the origin of life.

Authors: Goldman, Aaron D. Samudrala, Ram Baross, John A.

Source: Biology Direct. 2010, Vol. 5, p15-26. 12p.

Accurate Prediction of Secreted Substrates and Identification of a Conserved Putative Secretion Signal for Type III Secretion Systems.

Authors: Samudrala, Ram Heffron, Fred McDermott, Jason E.

Source: PLoS Pathogens. Apr2009, Vol. 5 Issue 4, p1-15. 15p. 4 Charts, 2 Graphs.

Automated functional classification of experimental and predicted protein structures.

Authors: Kai Wang Samudrala, Ram

Source: BMC Bioinformatics. 2006, Vol. 7, p278-10. 10p. 6 Diagrams, 2 Charts, 6 Graphs.

Improved prediction of HIV-1 protease-inhibitor binding energies by molecular dynamics simulations.

Authors: Jenwitheesuk, Ekachai Samudrala, Ram

Source: BMC Structural Biology. 2003, Vol. 3, p2-9. 9p. 1 Diagram, 3 Charts, 1 Graph.

A comprehensive analysis of 40 blind protein structure predictions.

Authors: Samudrala, Ram Levitt, Michael

Source: BMC Structural Biology. 2002, Vol. 2, p3-16. 16p. 5 Diagrams, 6 Charts, 1 Graph.

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Multiscale Virtual Screening Optimization for Shotgun Drug Repurposing Using the CANDO Platform.

Authors: Hudson, Matthew L. Samudrala, Ram Tutone, Marco et al.

Source: Molecules. May2021, Vol. 26 Issue 9, p2581-2581. 1p.

A protein sequence meta-functional signature for calcium binding residue prediction

Authors: Horst, Jeremy A. Samudrala, Ram

Source: Pattern Recognition Letters. Oct2010, Vol. 31 Issue 14, p2103-2112. 10p.

Subjects: Amino acid sequence, Calcium-binding proteins, Algorithms, Binding sites, Prediction theory, Protein structure

Identifying Protein Features Responsible for Improved Drug Repurposing Accuracies Using the CANDO Platform: Implications for Drug Design.

Authors: Mangione, William Samudrala, Ram

Source: Molecules. Jan2019, Vol. 24 Issue 1, p167. 1p. 2 Diagrams, 6 Graphs.