Search Results - "Shechner DM"

DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci.

Authors: Liu Y McGann CD Herlihy CP et al.

Source: ELife [Elife] 2026 Apr 07; Vol. 13. Date of Electronic Publication: 2026 Apr 07.

Publication Type: Journal Article

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

DNA O-MAP uncovers the molecular neighborhoods associated with specific genomic loci.

Authors: Liu Y McGann CD Herlihy CP et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 Aug 28. Date of Electronic Publication: 2025 Aug 28.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

A molecular cartographer's toolkit for mapping RNA's uncharted realms.

Authors: Mardakheh FK Shechner DM

Source: Cell reports [Cell Rep] 2025 Jul 22; Vol. 44 (7), pp. 115877. Date of Electronic Publication: 2025 Jun 19.

Publication Type: Journal Article; Review

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Xist Repeat A coordinates an assembly of SR proteins to recruit SPEN and induce gene silencing.

Authors: Trotman JB Porrello A Schactler SA et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2025 May 26. Date of Electronic Publication: 2025 May 26.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Efficient and highly amplified imaging of nucleic acid targets in cellular and histopathological samples with pSABER.

Authors: Attar S Browning VE Krebs M et al.

Source: Nature methods [Nat Methods] 2025 Jan; Vol. 22 (1), pp. 156-165. Date of Electronic Publication: 2024 Nov 15.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

High-throughput identification of calcium-regulated proteins across diverse proteomes.

Authors: Locke TM Fields R Gizinski H et al.

Source: Cell reports [Cell Rep] 2024 Nov 26; Vol. 43 (11), pp. 114879. Date of Electronic Publication: 2024 Oct 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Nascent transcript O-MAP reveals the molecular architecture of a single-locus subnuclear compartment built by RBM20 and the TTN RNA.

Authors: Kania EE Fenix A Marciniak DM et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Nov 13. Date of Electronic Publication: 2024 Nov 13.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Multiomic characterization of RNA microenvironments by oligonucleotide-mediated proximity-interactome mapping.

Authors: Tsue AF Kania EE Lei DQ et al.

Source: Nature methods [Nat Methods] 2024 Nov; Vol. 21 (11), pp. 2058-2071. Date of Electronic Publication: 2024 Oct 28.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

Architecture of an RNA polymerase ribozyme illuminates the RNA World.

Authors: Shechner DM; Department of Pharmacology, University of Washington, Seattle, WA, USA; Institute for Stem Cell and Regenerative Medicine, Seattle, WA, USA; Brotman Baty Institute for Precision Medicine, Seattle, WA, USA. Electronic address: shechner@uw.edu.

Source: Trends in genetics : TIG [Trends Genet] 2024 Apr; Vol. 40 (4), pp. 291-292. Date of Electronic Publication: 2024 Mar 13.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Elsevier Trends Journals Country of Publication: England NLM ID: 8507085 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 0168-9525 (Print) Linking ISSN: 01689525 NLM ISO Abbreviation: Trends Genet Subsets: MEDLINE

High-Throughput Identification of Calcium Regulated Proteins Across Diverse Proteomes.

Authors: Locke TM Fields R Gizinski H et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jan 22. Date of Electronic Publication: 2024 Jan 22.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Programmable peroxidase-assisted signal amplification enables flexible detection of nucleic acid targets in cellular and histopathological specimens.

Authors: Attar S Browning VE Liu Y et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Feb 01. Date of Electronic Publication: 2023 Feb 01.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Oligonucleotide-directed proximity-interactome mapping (O-MAP): A unified method for discovering RNA-interacting proteins, transcripts and genomic loci in situ.

Authors: Tsue AF Kania EE Lei DQ et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Jan 20. Date of Electronic Publication: 2023 Jan 20.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

High-throughput identification of RNA nuclear enrichment sequences.

Authors: Shukla CJ McCorkindale AL Gerhardinger C et al.

Source: The EMBO journal [EMBO J] 2018 Mar 15; Vol. 37 (6). Date of Electronic Publication: 2018 Jan 15.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 8208664 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1460-2075 (Electronic) Linking ISSN: 02614189 NLM ISO Abbreviation: EMBO J Subsets: MEDLINE

Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.

Authors: Kaewsapsak P Shechner DM Mallard W et al.

Source: ELife [Elife] 2017 Dec 14; Vol. 6. Date of Electronic Publication: 2017 Dec 14.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Targeting Noncoding RNA Domains to Genomic Loci with CRISPR-Display: Guidelines for Designing, Building, and Testing sgRNA-ncRNA Expression Constructs.

Authors: Shechner DM; Department of Pharmacology, University of Washington, Seattle, WA, USA. shechner@uw.edu.

Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2021; Vol. 2162, pp. 115-152.

Publication Type: Journal Article

Journal Info: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

Multiplexable, locus-specific targeting of long RNAs with CRISPR-Display.

Authors: Shechner DM Hacisuleyman E Younger ST et al.

Source: Nature methods [Nat Methods] 2015 Jul; Vol. 12 (7), pp. 664-70. Date of Electronic Publication: 2015 Jun 01.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE

The structural basis of RNA-catalyzed RNA polymerization.

Authors: Shechner DM Bartel DP

Source: Nature structural & molecular biology [Nat Struct Mol Biol] 2011 Aug 21; Vol. 18 (9), pp. 1036-42. Date of Electronic Publication: 2011 Aug 21.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101186374 Publication Model: Electronic Cited Medium: Internet ISSN: 1545-9985 (Electronic) Linking ISSN: 15459985 NLM ISO Abbreviation: Nat Struct Mol Biol Subsets: MEDLINE

A portable RNA sequence whose recognition by a synthetic antibody facilitates structural determination.

Authors: Koldobskaya Y Duguid EM Shechner DM et al.

Source: Nature structural & molecular biology [Nat Struct Mol Biol] 2011 Jan; Vol. 18 (1), pp. 100-6. Date of Electronic Publication: 2010 Dec 12.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101186374 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-9985 (Electronic) Linking ISSN: 15459985 NLM ISO Abbreviation: Nat Struct Mol Biol Subsets: MEDLINE

Crystal structure of the catalytic core of an RNA-polymerase ribozyme.

Authors: Shechner DM Grant RA Bagby SC et al.

Source: Science (New York, N.Y.) [Science] 2009 Nov 27; Vol. 326 (5957), pp. 1271-5.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

Spatiotemporal allele organization by allele-specific CRISPR live-cell imaging (SNP-CLING).

Authors: Maass PG Barutcu AR Shechner DM et al.

Source: Nature structural & molecular biology [Nat Struct Mol Biol] 2018 Feb; Vol. 25 (2), pp. 176-184. Date of Electronic Publication: 2018 Jan 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101186374 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1545-9985 (Electronic) Linking ISSN: 15459985 NLM ISO Abbreviation: Nat Struct Mol Biol