Search Results - "Shepard SS"

Development of avian influenza A(H5) virus datasets for Nextclade enables rapid and accurate clade assignment.

Authors: Ort JT Shepard SS Zolnoski SA et al.

Source: Virus evolution [Virus Evol] 2025 Aug 04; Vol. 11 (1), pp. veaf058. Date of Electronic Publication: 2025 Aug 04 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101664675 Publication Model: eCollection Cited Medium: Print ISSN: 2057-1577 (Print) Linking ISSN: 20571577 NLM ISO Abbreviation: Virus Evol Subsets: In Process

Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections.

Authors: VanInsberghe D McBride DS DaSilva J et al.

Source: PLoS pathogens [PLoS Pathog] 2024 Apr 16; Vol. 20 (4), pp. e1012131. Date of Electronic Publication: 2024 Apr 16 (Print Publication: 2024).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

Genomic Surveillance for SARS-CoV-2 Variants: Circulation of Omicron Lineages - United States, January 2022-May 2023.

Authors: Ma KC Shirk P Lambrou AS et al.

Source: MMWR. Morbidity and mortality weekly report [MMWR Morb Mortal Wkly Rep] 2023 Jun 16; Vol. 72 (24), pp. 651-656. Date of Electronic Publication: 2023 Jun 16.

Publication Type: Journal Article

Journal Info: Publisher: U.S. Centers for Disease Control Country of Publication: United States NLM ID: 7802429 Publication Model: Electronic Cited Medium: Internet ISSN: 1545-861X (Electronic) Linking ISSN: 01492195 NLM ISO Abbreviation: MMWR Morb Mortal Wkly Rep Subsets: MEDLINE

SARS-CoV-2 Delta-Omicron Recombinant Viruses, United States.

Authors: Lacek KA Rambo-Martin BL Batra D et al.

Source: Emerging infectious diseases [Emerg Infect Dis] 2022 Jul; Vol. 28 (7), pp. 1442-1445. Date of Electronic Publication: 2022 May 12.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: National Center for Infectious Diseases, Centers for Disease Control and Prevention (CDC) Country of Publication: United States NLM ID: 9508155 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1080-6059 (Electronic) Linking ISSN: 10806040 NLM ISO Abbreviation: Emerg Infect Dis Subsets: MEDLINE

Novel and extendable genotyping system for human respiratory syncytial virus based on whole-genome sequence analysis.

Authors: Chen J Qiu X Avadhanula V et al.

Source: Influenza and other respiratory viruses [Influenza Other Respir Viruses] 2022 May; Vol. 16 (3), pp. 492-500. Date of Electronic Publication: 2021 Dec 10.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Wiley Country of Publication: England NLM ID: 101304007 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1750-2659 (Electronic) Linking ISSN: 17502640 NLM ISO Abbreviation: Influenza Other Respir Viruses Subsets: MEDLINE

Genomic Surveillance for SARS-CoV-2 Variants: Predominance of the Delta (B.1.617.2) and Omicron (B.1.1.529) Variants - United States, June 2021-January 2022.

Authors: Lambrou AS Shirk P Steele MK et al.

Corporate Authors: Lambrou AS Shirk P Steele MK et al.

Source: MMWR. Morbidity and mortality weekly report [MMWR Morb Mortal Wkly Rep] 2022 Feb 11; Vol. 71 (6), pp. 206-211. Date of Electronic Publication: 2022 Feb 11.

Publication Type: Technical Report; Journal Article

Journal Info: Publisher: U.S. Centers for Disease Control Country of Publication: United States NLM ID: 7802429 Publication Model: Electronic Cited Medium: Internet ISSN: 1545-861X (Electronic) Linking ISSN: 01492195 NLM ISO Abbreviation: MMWR Morb Mortal Wkly Rep Subsets: MEDLINE

Impact of Immune Priming, Vaccination, and Infection on Influenza A(H3N2) Antibody Landscapes in Children.

Authors: Hinojosa M Shepard SS Chung JR et al.

Source: The Journal of infectious diseases [J Infect Dis] 2021 Aug 02; Vol. 224 (3), pp. 469-480.

Publication Type: Journal Article; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0413675 Publication Model: Print Cited Medium: Internet ISSN: 1537-6613 (Electronic) Linking ISSN: 00221899 NLM ISO Abbreviation: J Infect Dis Subsets: MEDLINE

Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections.

Authors: VanInsberghe D McBride DS DaSilva J et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Oct 25. Date of Electronic Publication: 2023 Oct 25.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Antigenic characterization of highly pathogenic avian influenza A(H5N1) viruses with chicken and ferret antisera reveals clade-dependent variation in hemagglutination inhibition profiles.

Authors: Thi Nguyen D Shepard SS Burke DF et al.

Source: Emerging microbes & infections [Emerg Microbes Infect] 2018 May 31; Vol. 7 (1), pp. 100. Date of Electronic Publication: 2018 May 31.

Publication Type: Journal Article

Journal Info: Publisher: Taylor & Francis Country of Publication: United States NLM ID: 101594885 Publication Model: Electronic Cited Medium: Internet ISSN: 2222-1751 (Electronic) Linking ISSN: 22221751 NLM ISO Abbreviation: Emerg Microbes Infect Subsets: MEDLINE

Preliminary Evaluation of the Effect of Investigational Ebola Virus Disease Treatments on Viral Genome Sequences.

Authors: Whitmer SL Albariño C Shepard SS et al.

Source: The Journal of infectious diseases [J Infect Dis] 2016 Oct 15; Vol. 214 (suppl 3), pp. S333-S341. Date of Electronic Publication: 2016 Aug 11.

Publication Type: Journal Article; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 0413675 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1537-6613 (Electronic) Linking ISSN: 00221899 NLM ISO Abbreviation: J Infect Dis Subsets: MEDLINE

Erratum to: Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.

Authors: Shepard SS Meno S Bahl J et al.

Source: BMC genomics [BMC Genomics] 2016 Oct 13; Vol. 17 (1), pp. 801. Date of Electronic Publication: 2016 Oct 13.

Publication Type: Journal Article; Published Erratum

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: PubMed not MEDLINE

Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.

Authors: Shepard SS Meno S Bahl J et al.

Source: BMC genomics [BMC Genomics] 2016 Sep 05; Vol. 17, pp. 708. Date of Electronic Publication: 2016 Sep 05.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Avian Influenza A Viruses Reassort and Diversify Differently in Mallards and Mammals.

Authors: Ganti K Bagga A DaSilva J et al.

Source: Viruses [Viruses] 2021 Mar 19; Vol. 13 (3). Date of Electronic Publication: 2021 Mar 19.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: MDPI Country of Publication: Switzerland NLM ID: 101509722 Publication Model: Electronic Cited Medium: Internet ISSN: 1999-4915 (Electronic) Linking ISSN: 19994915 NLM ISO Abbreviation: Viruses Subsets: MEDLINE

LABEL: fast and accurate lineage assignment with assessment of H5N1 and H9N2 influenza A hemagglutinins.

Authors: Shepard SS Davis CT Bahl J et al.

Source: PloS one [PLoS One] 2014 Jan 23; Vol. 9 (1), pp. e86921. Date of Electronic Publication: 2014 Jan 23 (Print Publication: 2014).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Structural and antigenic variation among diverse clade 2 H5N1 viruses.

Authors: Shore DA Yang H Balish AL et al.

Source: PloS one [PLoS One] 2013 Sep 27; Vol. 8 (9), pp. e75209. Date of Electronic Publication: 2013 Sep 27 (Print Publication: 2013).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Exploiting mid-range DNA patterns for sequence classification: binary abstraction Markov models.

Authors: Shepard SS McSweeny A Serpen G et al.

Source: Nucleic acids research [Nucleic Acids Res] 2012 Jun; Vol. 40 (11), pp. 4765-73. Date of Electronic Publication: 2012 Feb 16.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Critical association of ncRNA with introns.

Authors: Rearick D Prakash A McSweeny A et al.

Source: Nucleic acids research [Nucleic Acids Res] 2011 Mar; Vol. 39 (6), pp. 2357-66. Date of Electronic Publication: 2010 Nov 10.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Evolution of genomic sequence inhomogeneity at mid-range scales.

Authors: Prakash A Shepard SS He J et al.

Source: BMC genomics [BMC Genomics] 2009 Nov 05; Vol. 10, pp. 513. Date of Electronic Publication: 2009 Nov 05.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965258 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2164 (Electronic) Linking ISSN: 14712164 NLM ISO Abbreviation: BMC Genomics Subsets: MEDLINE

Author Correction: Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.

Authors: Keller MW Rambo-Martin BL Wilson MM et al.

Source: Scientific reports [Sci Rep] 2018 Oct 19; Vol. 8 (1), pp. 15746. Date of Electronic Publication: 2018 Oct 19.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: PubMed not MEDLINE

Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.

Authors: Keller MW Rambo-Martin BL Wilson MM et al.

Source: Scientific reports [Sci Rep] 2018 Sep 26; Vol. 8 (1), pp. 14408. Date of Electronic Publication: 2018 Sep 26.

Publication Type: Journal Article; Research Support, U.S. Gov't, P.H.S.

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE