Search Results - "Shepard SS"

CAPYBARA: A generalizable framework for predicting serological measurements across human cohorts.

Authors: Orsinelli-Rivers, Sierra Beaglehole, Daniel Einav, Tal

Source: PLoS Computational Biology. 3/30/2026, Vol. 22 Issue 3, p1-20. 20p.

The impact of viral and host factors on the influenza A virus transmission bottleneck.

Authors: Krupinsky, Kathryn C. Bendall, Emily E. Zhu, Yuwei et al.

Source: PLoS Pathogens. 3/25/2026, Vol. 22 Issue 3, p1-15. 15p.

Accounting for Defective Viral Genomes in viral consensus genome reconstruction, application to influenza virus.

Authors: Da Silva, Kévin Naffakh, Nadia Rameix-Welti, Marie-Anne et al.

Source: PLoS Computational Biology. 7/16/2026, Vol. 22 Issue 7, p1-24. 24p.

Surveillance on California dairy farms reveals multiple possible sources of H5N1 influenza virus transmission.

Authors: Campbell, A. J. Shephard, Meredith Paulos, Abigail P. et al.

Source: PLoS Biology. 5/5/2026, Vol. 24 Issue 5, p1-21. 21p.

Author Correction: Direct RNA Sequencing of the Coding Complete Influenza A Virus Genome.

Authors: Keller MW Rambo-Martin BL Wilson MM et al.

Source: Scientific reports [Sci Rep] 2018 Oct 19; Vol. 8 (1), pp. 15746. Date of Electronic Publication: 2018 Oct 19.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: PubMed not MEDLINE

Intra-patient neuraminidase mutations in avian H5N1 influenza virus reduce sialidase activity to complement weaker hemagglutinin binding and facilitate human infection.

Authors: Watanabe, Yohei Ibrahim, Madiha S. Arai, Yasuha et al.

Source: PLoS Pathogens. 1/23/2026, Vol. 22 Issue 1, p1-28. 28p.

Different antigenic distance metrics generate similar predictions of influenza vaccine response breadth despite moderate correlation.

Authors: Billings, W. Zane Ge, Yang Skarlupka, Amanda L. et al.

Source: PLoS Computational Biology. 11/14/2025, Vol. 21 Issue 11, p1-22. 22p.

SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping.

Authors: Ellegaard, Kirsten Maren Gunalan, Vithiagaran Sieber, Raphael et al.

Source: PLoS ONE. 10/16/2025, Vol. 20 Issue 10, p1-16. 16p.

Epidemiological dynamics of influenza B virus across multiple seasons in Kenya and Uganda inferred from sequence data, 2010–2021.

Authors: Nyarango, Brenda K. Owuor, D. Collins Isoe, Everlyne et al.

Source: BMC Infectious Diseases. 8/29/2025, Vol. 25 Issue 1, p1-12. 12p.

Identification & genetic & virological characterisation of a human case of avian influenza A (H9N2) virus from Eastern India.

Authors: Majumdar, Agniva Potdar, Varsha Vipat, Veena et al.

Source: Indian Journal of Medical Research. Mar2025, Vol. 161 Issue 3, p1-10. 10p.

Using homologous network to identify reassortment risk in H5Nx avian influenza viruses.

Authors: Gong, Ruihao Feng, Zijian Zhang, Yanyun

Source: PLoS Computational Biology. 7/22/2025, Vol. 21 Issue 7, p1-18. 18p.

Redefining the spliceosomal introns of the sexually transmitted parasite Trichomonas vaginalis and its close relative in columbid birds.

Authors: Callejas-Hernández, Francisco Shiratori, Mari Sullivan, Steven A. et al.

Source: PLoS Pathogens. 7/23/2025, Vol. 21 Issue 7, p1-18. 18p.

Genetic drift and purifying selection shape within-host influenza A virus populations during natural swine infections.

Authors: VanInsberghe D McBride DS DaSilva J et al.

Source: PLoS pathogens [PLoS Pathog] 2024 Apr 16; Vol. 20 (4), pp. e1012131. Date of Electronic Publication: 2024 Apr 16 (Print Publication: 2024).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

Mapping the viral battlefield: SARS-CoV-2 infection dynamics among healthcare workers in Brazil.

Authors: Gasparoto, Antonio Luiz Dal Bello Graeff, Samara Vilas-Bôas de Souza Santiago, Wellyngton Matheus et al.

Source: Human Resources for Health. 2/11/2025, Vol. 23 Issue 1, p1-13. 13p.

In‐field detection and characterization of B/Victoria lineage deletion variant viruses causing early influenza activity and an outbreak in Louisiana, 2019.

Authors: Shu, Bo Wilson, Malania M. Keller, Matthew W. et al.

Source: Influenza & Other Respiratory Viruses. Jan2024, Vol. 18 Issue 1, p1-5. 5p.

Optimized high-throughput whole-genome sequencing workflow for surveillance of influenza A virus.

Authors: Licheri, Matthias Mwanga, Mike Licheri, Manon F. et al.

Source: Genome Medicine. 9/26/2025, Vol. 17 Issue 1, p1-12. 12p.

Universal amplification and sequencing of foot-and-mouth disease virus complete genomes using nanopore technology.

Authors: Shaw, Andrew E. Lebani, Kebaneilwe González Gordon, Lina et al.

Source: BMC Genomics. 8/22/2025, Vol. 26 Issue 1, p1-19. 19p.

Phylo-geo haplotype network-based characterization of SARS-CoV-2 strains circulating in India (2020-2022).

Authors: Potdar, Varsha Atul Laxmivandana, Rongala Walimbe, Atul M. et al.

Source: Indian Journal of Medical Research. Jun2024, Vol. 159 Issue 6, p1-6. 6p.

Genomic Surveillance for SARS-CoV-2 Variants: Circulation of Omicron Lineages - United States, January 2022-May 2023.

Authors: Ma KC Shirk P Lambrou AS et al.

Source: MMWR. Morbidity and mortality weekly report [MMWR Morb Mortal Wkly Rep] 2023 Jun 16; Vol. 72 (24), pp. 651-656. Date of Electronic Publication: 2023 Jun 16.

Publication Type: Journal Article

Journal Info: Publisher: U.S. Centers for Disease Control Country of Publication: United States NLM ID: 7802429 Publication Model: Electronic Cited Medium: Internet ISSN: 1545-861X (Electronic) Linking ISSN: 01492195 NLM ISO Abbreviation: MMWR Morb Mortal Wkly Rep Subsets: MEDLINE

Systematic genomic analysis of SARS-CoV-2 co-infections throughout the pandemic and segregation of the strains involved.

Authors: Peñas-Utrilla, Daniel Pérez-Lago, Laura Molero-Salinas, Andrea et al.

Source: Genome Medicine. 7/24/2023, Vol. 15 Issue 1, p1-16. 16p.