Search Results - "Silva-Rocha, Rafael"

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Gene expression of the arsenic resistance operon in Chromobacterium violaceum ATCC 12472.

Authors: Azevedo, Juliana Simão Nina de Silva-Rocha, Rafael Silva, Artur et al.

Source: Canadian Journal of Microbiology. Feb2008, Vol. 54 Issue 2, p137-142. 5p. 2 Charts, 3 Graphs.

A Practical Teaching Course in Directed Protein Evolution Using the Green Fluorescent Protein as a Model

Authors: Ruller, Roberto Silva-Rocha, Rafael Silva, Artur et al.

Source: Biochemistry and Molecular Biology Education. Jan-Feb 2011 39(1):21-27.

Peer Reviewed: Y

Page Count: 7

Descriptors: Chemistry, Biotechnology, Engineering, Scientific Research, Scientific Concepts, Models, Teacher Education, Foreign Countries, Graduate Students, Science Education, Higher Education

Geographic Terms: Brazil

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Picking the right metaphors for addressing microbial systems: economic theory helps understanding biological complexity.

Authors: Kim, Juhyun Silva-Rocha, Rafael de Lorenzo, Víctor

Source: International Microbiology. Nov2021, Vol. 24 Issue 4, p507-519. 13p.

Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarum.

Authors: Silva-Rocha, Rafael Pontelli, Marjorie Cornejo Furtado, Gilvan Pessoa et al.

Source: PLoS ONE. Jun2015, Vol. 10 Issue 6, p1-13. 13p.

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The pWW0 plasmid imposes a stochastic expression regime to the chromosomal ortho pathway for benzoate metabolism in Pseudomonas putida.

Authors: Silva-Rocha, Rafael Lorenzo, Victor

Source: FEMS Microbiology Letters. Jul2014, Vol. 356 Issue 2, p176-183. 8p.

Deciphering the Cis-Regulatory Elements for XYR1 and CRE1 Regulators in Trichoderma reesei.

Authors: Silva-Rocha, Rafael Castro, Lilian dos Santos Antoniêto, Amanda Cristina Campos et al.

Source: PLoS ONE. Jun2014, Vol. 9 Issue 6, p1-10. 10p.

Bacteria as Computers: Formalizing Transcriptional Regulatory Networks by Way of Digital Logic Circuits.

Authors: SILVA-ROCHA, RAFAEL DE LORENZO, VÍCTOR

Source: International Journal of Unconventional Computing; 2012, Vol. 8 Issue 5/6, p517-528, 11p

A GFP-lacZ Bicistronic Reporter System for Promoter Analysis in Environmental Gram-Negative Bacteria.

Authors: Silva-Rocha, Rafael Lorenzo, Victor de

Source: PLoS ONE. Apr2012, Vol. 7 Issue 4, p1-8. 8p.

Reactome Array: Forging a Link Between Metabolome and Genome.

Authors: Beloqui, Ana Guazzaroni, María-Eugenia Pazos, Florencio et al.

Source: Science (pre-March 2025). 10/9/2009, Vol. 326 Issue 5950, p252-257. 6p.

Subjects: Genetic research, Cell metabolism, Genomics, Gene libraries, Microbial metabolites, Enzymes

The Post-genomic Era of Trichoderma reesei: What's Next?

Authors: Gupta, Vijai Kumar Steindorff, Andrei Stecca de Paula, Renato Graciano et al.

Source: Trends in Biotechnology; Dec2016, Vol. 34 Issue 12, p970-982, 13p

Mining logic gates in prokaryotic transcriptional regulation networks

Authors: Silva-Rocha, Rafael de Lorenzo, Víctor

Source: FEBS Letters. Apr2008, Vol. 582 Issue 8, p1237-1244. 8p.

Subjects: Prokaryotes, Microorganisms, Boolean algebra, Electric circuits

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2.

Authors: Silva-Rocha, Rafael Pérez-Pantoja, Danilo de Lorenzo, Víctor

Source: ISME Journal: Multidisciplinary Journal of Microbial Ecology. Feb2013, Vol. 7 Issue 2, p229-232. 4p.

Subjects: Microbial ecology, Pseudomonas putida, Gene regulatory networks, Gene expression in bacteria, Genetic repressors, Biodegradation, Genetic code

The private life of environmental bacteria: pollutant biodegradation at the single cell level.

Authors: Nikel, Pablo Iván Silva ‐ Rocha, Rafael Benedetti, Ilaria et al.

Source: Environmental Microbiology. Mar2014, Vol. 16 Issue 3, p628-642. 15p.

Subjects: Biodegradation, Bacterial genetics, Genetic transcription, Molecular biology, Microbiology, Microorganisms, Aromatic compounds

The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space.

Authors: Silva‐Rocha, Rafael Lorenzo, Víctor

Source: Environmental Microbiology. Jan2013, Vol. 15 Issue 1, p271-286. 16p.

Subjects: Pseudomonas putida, Bacterial proteins, Bacterial ecology, Bacterial genetics, Cellular signal transduction, Bacterial metabolism, Gene expression in bacteria, Algorithms

The IHF regulon of exponentially growing Pseudomonas putida cells.

Authors: Silva‐Rocha, Rafael Chavarría, Max Kleijn, Roelco J. et al.

Source: Environmental Microbiology. Jan2013, Vol. 15 Issue 1, p49-63. 15p.

Subjects: Pseudomonas putida, Integration host factor, Bacterial cells, Cell growth, Bacterial metabolism, RNA polymerases, Cell culture, Bacterial gene mapping

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms.

Authors: Silva-Rocha, Rafael Tamames, Javier dos Santos, Vitor Martins et al.

Source: Environmental Microbiology. Sep2011, Vol. 13 Issue 9, p2389-2402. 14p. 5 Diagrams.

Subjects: Bacteria, Microbial ecology, Pollutants, Biodegradation, Cell physiology, Transcription factors, Cellular signal transduction, Bacterial metabolism

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