Search Results - "Sim EM"

Estimating the deferred value of pathogen genomic data for secondary use.

Authors: Sintchenko V Sim EM Suster CJE

Source: Scientific data [Sci Data] 2025 May 13; Vol. 12 (1), pp. 784. Date of Electronic Publication: 2025 May 13.

Publication Type: Journal Article; Dataset

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Characterisation of Bordetella pertussis virulence and macrolide resistance in Australia by targeted culture-independent sequencing: a genomic epidemiology study.

Authors: Fong W Rockett RJ Tam KK et al.

Source: The Lancet. Microbe [Lancet Microbe] 2026 Mar; Vol. 7 (3), pp. 101286. Date of Electronic Publication: 2026 Feb 25.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101769019 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-5247 (Electronic) Linking ISSN: 26665247 NLM ISO Abbreviation: Lancet Microbe Subsets: MEDLINE

Emergence of Mycobacterium orygis: novel insights into zoonotic reservoirs and genomic epidemiology.

Authors: Hugh BT Sim EM Crighton T et al.

Source: Frontiers in public health [Front Public Health] 2025 Mar 19; Vol. 13, pp. 1568194. Date of Electronic Publication: 2025 Mar 19 (Print Publication: 2025).

Publication Type: Journal Article; Review

Journal Info: Publisher: Frontiers Editorial Office Country of Publication: Switzerland NLM ID: 101616579 Publication Model: eCollection Cited Medium: Internet ISSN: 2296-2565 (Electronic) Linking ISSN: 22962565 NLM ISO Abbreviation: Front Public Health Subsets: MEDLINE

Spatio-temporal patterns of tuberculosis revealed by routine Mycobacterium tuberculosis sequencing in Australia: an extended patient cohort analysis (2017-2023).

Authors: Zhang X Suster CJE Sim EM et al.

Source: The Lancet regional health. Western Pacific [Lancet Reg Health West Pac] 2026 Jan 08; Vol. 66, pp. 101784. Date of Electronic Publication: 2026 Jan 08 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101774968 Publication Model: eCollection Cited Medium: Internet ISSN: 2666-6065 (Electronic) Linking ISSN: 26666065 NLM ISO Abbreviation: Lancet Reg Health West Pac Subsets: PubMed not MEDLINE

Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics.

Authors: Sim EM Wang Q Howard P et al.

Source: PloS one [PLoS One] 2023 Aug 23; Vol. 18 (8), pp. e0289070. Date of Electronic Publication: 2023 Aug 23 (Print Publication: 2023).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Microbiological treatment failure associated with macrolide-resistant Bordetella pertussis.

Authors: Prabhakar D Fong W Sim EM et al.

Source: ASM case reports [ASM Case Rep] 2025 Mar 11; Vol. 1 (3). Date of Electronic Publication: 2025 Mar 11 (Print Publication: 2025).

Publication Type: Case Reports; Journal Article

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 9919031604206676 Publication Model: eCollection Cited Medium: Internet ISSN: 2996-2684 (Electronic) Linking ISSN: 29962684 NLM ISO Abbreviation: ASM Case Rep Subsets: PubMed not MEDLINE

Author Correction: The evolution and international spread of extensively drug resistant Shigella sonnei.

Authors: Mason LCE Greig DR Cowley LA et al.

Source: Nature communications [Nat Commun] 2023 Apr 21; Vol. 14 (1), pp. 2302. Date of Electronic Publication: 2023 Apr 21.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE; PubMed not MEDLINE

The evolution and international spread of extensively drug resistant Shigella sonnei.

Authors: Mason LCE Greig DR Cowley LA et al.

Source: Nature communications [Nat Commun] 2023 Apr 08; Vol. 14 (1), pp. 1983. Date of Electronic Publication: 2023 Apr 08.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance.

Authors: Rockett RJ Draper J Gall M et al.

Source: Nature communications [Nat Commun] 2022 May 18; Vol. 13 (1), pp. 2745. Date of Electronic Publication: 2022 May 18.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Pangenome Analysis of a Salmonella Enteritidis Population Links a Major Outbreak to a Gifsy-1-Like Prophage Containing Anti-Inflammatory Gene gogB.

Authors: Svahn AJ Suster CJE Chang SL et al.

Source: Microbiology spectrum [Microbiol Spectr] 2023 Apr 13; Vol. 11 (2), pp. e0279122. Date of Electronic Publication: 2023 Mar 14.

Publication Type: Journal Article

Journal Info: Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE; PubMed not MEDLINE

Genomes of Vibrio cholerae O1 Serotype Ogawa Associated with Current Cholera Activity in Pakistan.

Authors: Sim EM Martinez E Blackwell GA et al.

Source: Microbiology resource announcements [Microbiol Resour Announc] 2023 Jan 24; Vol. 12 (1), pp. e0088722. Date of Electronic Publication: 2022 Nov 30.

Publication Type: Journal Article

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101728794 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2576-098X (Electronic) Linking ISSN: 2576098X NLM ISO Abbreviation: Microbiol Resour Announc Subsets: PubMed not MEDLINE

Case report: a genomics-guided reclassification of a blood culture isolate misassigned by MALDI-TOF as Yersinia pestis.

Authors: Sim EM Koh B Ng J et al.

Source: Access microbiology [Access Microbiol] 2022 Oct 03; Vol. 4 (10), pp. acmi000422. Date of Electronic Publication: 2022 Oct 03 (Print Publication: 2022).

Publication Type: Case Reports; Journal Article

Journal Info: Publisher: Microbiology Society Country of Publication: England NLM ID: 101746927 Publication Model: eCollection Cited Medium: Internet ISSN: 2516-8290 (Electronic) Linking ISSN: 25168290 NLM ISO Abbreviation: Access Microbiol Subsets: PubMed not MEDLINE

Resistance Mutations in SARS-CoV-2 Delta Variant after Sotrovimab Use.

Authors: Rockett R Basile K Maddocks S et al.

Source: The New England journal of medicine [N Engl J Med] 2022 Apr 14; Vol. 386 (15), pp. 1477-1479. Date of Electronic Publication: 2022 Mar 09.

Publication Type: Letter

Journal Info: Publisher: Massachusetts Medical Society Country of Publication: United States NLM ID: 0255562 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1533-4406 (Electronic) Linking ISSN: 00284793 NLM ISO Abbreviation: N Engl J Med Subsets: MEDLINE

Added Value of Genomic Surveillance of Virulence Factors in Shiga Toxin-Producing Escherichia coli in New South Wales, Australia.

Authors: Sim EM Kim R Gall M et al.

Source: Frontiers in microbiology [Front Microbiol] 2021 Dec 23; Vol. 12, pp. 713724. Date of Electronic Publication: 2021 Dec 23 (Print Publication: 2021).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation Country of Publication: Switzerland NLM ID: 101548977 Publication Model: eCollection Cited Medium: Print ISSN: 1664-302X (Print) Linking ISSN: 1664302X NLM ISO Abbreviation: Front Microbiol Subsets: PubMed not MEDLINE

Genomic Epidemiology of NDM-1-Encoding Plasmids in Latin American Clinical Isolates Reveals Insights into the Evolution of Multidrug Resistance.

Authors: Marquez-Ortiz RA Haggerty L Olarte N et al.

Source: Genome biology and evolution [Genome Biol Evol] 2017 Jun 01; Vol. 9 (6), pp. 1725-1741.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 101509707 Publication Model: Print Cited Medium: Internet ISSN: 1759-6653 (Electronic) Linking ISSN: 17596653 NLM ISO Abbreviation: Genome Biol Evol Subsets: MEDLINE

Revealing COVID-19 transmission in Australia by SARS-CoV-2 genome sequencing and agent-based modeling.

Authors: Rockett RJ Arnott A Lam C et al.

Source: Nature medicine [Nat Med] 2020 Sep; Vol. 26 (9), pp. 1398-1404. Date of Electronic Publication: 2020 Jul 09.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Company Country of Publication: United States NLM ID: 9502015 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-170X (Electronic) Linking ISSN: 10788956 NLM ISO Abbreviation: Nat Med Subsets: MEDLINE

Visualization of Phage Genomic Data: Comparative Genomics and Publication-Quality Diagrams.

Authors: Turner D Sutton JM Reynolds DM et al.

Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2018; Vol. 1681, pp. 239-260.

Publication Type: Comparative Study; Journal Article

Journal Info: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

First Complete Providencia rettgeri Genome Sequence, the NDM-1-Producing Clinical Strain RB151.

Authors: Marquez-Ortiz RA Haggerty L Sim EM et al.

Source: Genome announcements [Genome Announc] 2017 Jan 19; Vol. 5 (3). Date of Electronic Publication: 2017 Jan 19.

Publication Type: Journal Article

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 101595808 Publication Model: Electronic Cited Medium: Print ISSN: 2169-8287 (Print) NLM ISO Abbreviation: Genome Announc Subsets: PubMed not MEDLINE

Brief intraoperative heparinization and blood loss in anterior lumbar spine surgery.

Authors: Sim EM Claydon MH Parker RM et al.

Source: Journal of neurosurgery. Spine [J Neurosurg Spine] 2015 Sep; Vol. 23 (3), pp. 309-13. Date of Electronic Publication: 2015 Jun 05.

Publication Type: Journal Article

Journal Info: Publisher: American Association of Neurological Surgeons Country of Publication: United States NLM ID: 101223545 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1547-5646 (Electronic) Linking ISSN: 15475646 NLM ISO Abbreviation: J Neurosurg Spine Subsets: MEDLINE

Phylogenetically related Argentinean and Australian Escherichia coli O157 isolates are distinguished by virulence clades and alternative Shiga toxin 1 and 2 prophages.

Authors: Mellor GE Sim EM Barlow RS et al.

Source: Applied and environmental microbiology [Appl Environ Microbiol] 2012 Jul; Vol. 78 (13), pp. 4724-31. Date of Electronic Publication: 2012 Apr 27.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Society for Microbiology Country of Publication: United States NLM ID: 7605801 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1098-5336 (Electronic) Linking ISSN: 00992240 NLM ISO Abbreviation: Appl Environ Microbiol Subsets: MEDLINE