Search Results - "Simmonds TJ"

QoALa: A comprehensive workflow for viral quasispecies diversity comparison using long-read sequencing data.

Authors: Pamornchainavakul, Nakarin Schroeder, Declan C. VanderWaal, Kimberly

Source: PLoS Computational Biology. 4/28/2026, Vol. 22 Issue 4, p1-20. 20p.

Effects of species and sex on the gut microbiome of four laboratory-reared fruit fly lines (Diptera: Tephritidae) using full-length 16S rRNA PacBio Kinnex sequencing.

Authors: Aoki S Weaver M Simmonds TJ et al.

Source: BMC microbiology [BMC Microbiol] 2025 Jul 28; Vol. 25 (1), pp. 455. Date of Electronic Publication: 2025 Jul 28.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100966981 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2180 (Electronic) Linking ISSN: 14712180 NLM ISO Abbreviation: BMC Microbiol Subsets: MEDLINE

Genome assembly and venom gene mapping in the medically important moth Lonomia casanarensis (Saturniidae: Hemileucinae).

Authors: Haji, Diler Chaturvedi, Samridhi Nguyen, Oanh H et al.

Source: G3: Genes | Genomes | Genetics. Jul2026, Vol. 16 Issue 7, p1-10. 10p.

Chromosome-level genome assembly of the Erythrina gall wasp, Quadrastichus erythrinae (Hymenoptera: Eulophidae).

Authors: Zhang, Y Miles Merondun, Justin Corpuz, Renee L et al.

Source: G3: Genes | Genomes | Genetics. Jul2026, Vol. 16 Issue 7, p1-9. 9p.

Chromosome-level genome assembly and annotation of Anthurium amnicola.

Authors: Lyu H Sim SB Geib SM et al.

Source: Scientific data [Sci Data] 2025 Apr 10; Vol. 12 (1), pp. 605. Date of Electronic Publication: 2025 Apr 10.

Publication Type: Journal Article; Dataset

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101640192 Publication Model: Electronic Cited Medium: Internet ISSN: 2052-4463 (Electronic) Linking ISSN: 20524463 NLM ISO Abbreviation: Sci Data Subsets: MEDLINE

Sodium azide mutagenesis induces a unique pattern of mutations.

Authors: Liu, Chaochih Frascarelli, Giulia Stec, Adrian O. et al.

Source: PLoS Genetics. 6/3/2025, Vol. 21 Issue 6, p1-21. 21p.

A chromosome-scale genome assembly for Clark's Nutcracker (Nucifraga columbiana).

Authors: Innes, Peter Carling, Matthew D Linck, Ethan B

Source: G3: Genes | Genomes | Genetics. May2026, Vol. 16 Issue 5, p1-7. 7p.

Haplotype-resolved genome assemblies for the New World screwworm, Cochliomyia hominivorax (Diptera: Calliphoridae), using the trio binning approach.

Authors: Hickner, Paul V Sim, Sheina B Luecke, David et al.

Source: G3: Genes | Genomes | Genetics. May2026, Vol. 16 Issue 5, p1-9. 9p.

Reference genome assemblies for the North American bumble bees Bombus flavifrons and Bombus fervidus , two phenotypically polymorphic species from distinct phylogenetic lineages.

Authors: Lozier, Jeffrey D Schweizer, Rena M Sim, Sheina B et al.

Source: G3: Genes | Genomes | Genetics. May2026, Vol. 16 Issue 5, p1-10. 10p.

Draft genome sequence and annotation of the enfumafungin producing fungus Hormonema carpetanum ATCC 74360.

Authors: Chen, Haodong Wang, Junyi Yang, Songbai et al.

Source: BMC Genomic Data. 8/8/2025, Vol. 26 Issue 1, p1-4. 4p.

Assessing the impact of diet formulation and age on targeted bacterial establishment in laboratory and mass-reared Mediterranean fruit fly using full-length 16S rRNA sequencing.

Authors: Mason CJ Nelson RC Weaver M et al.

Source: Microbiology spectrum [Microbiol Spectr] 2025 Jun 03; Vol. 13 (6), pp. e0288124. Date of Electronic Publication: 2025 May 15.

Publication Type: Journal Article

Journal Info: Publisher: ASM Press Country of Publication: United States NLM ID: 101634614 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2165-0497 (Electronic) Linking ISSN: 21650497 NLM ISO Abbreviation: Microbiol Spectr Subsets: MEDLINE

New reference genome assembly for the declining American Bumble Bee, Bombus pensylvanicus.

Authors: Lozier, Jeffrey D Schweizer, Rena M Sim, Sheina B et al.

Source: G3: Genes | Genomes | Genetics. Oct2025, Vol. 15 Issue 10, p1-9. 9p.

Optimization of genomic DNA and total RNA extraction protocols from microlepidopterans for high-fidelity long-read sequencing.

Authors: Nascimento, Eliza F. M. B. Queiroz, Erick L. S. Vidal, Leonardo A. et al.

Source: BMC Methods. 9/8/2025, Vol. 2 Issue 1, p1-14. 14p.

Inter and intra individual genomic edits contributing to white eye phenotype in the mango fruit fly, Bactrocera dorsalis Hendel (Diptera: Tephritidae) obtained through microinjection of ribo nucleo protein complex.

Authors: Karuppannasamy, Ashok Wishard, Rohan Ramasamy, Asokan et al.

Source: Nucleus (0029568X). Apr2024, Vol. 67 Issue 1, p39-46. 8p.

Chromosome-level genome assembly of Protandrena (Anthemurgus) passiflorae (Hymenoptera: Andrenidae), a host-plant specialist bee.

Authors: Parys, Katherine A Schweizer, Rena M Benavides, Ligia R et al.

Source: G3: Genes | Genomes | Genetics. Jul2025, Vol. 15 Issue 7, p1-10. 10p.

Chromosome segregation during spermatogenesis occurs through a unique center-kinetic mechanism in holocentric moth species.

Authors: Hockens, Clio Lorenzi, Hernan Wang, Tricia T. et al.

Source: PLoS Genetics. 6/24/2024, Vol. 20 Issue 6, p1-24. 24p.

Chromosome-level genome assembly of Eimeria tenella at the single-oocyst level.

Authors: Zhang, Kaihui Cai, Yudong Chen, Yuancai et al.

Source: BMC Genomics. 3/17/2025, Vol. 26 Issue 1, p1-17. 17p.

Reference genome of Calochortus tolmiei Hook. & Arn. (Liliaceae), a cat's ear mariposa lily.

Authors: Landis, Jacob B Harden, Julianna J Eifler, Evan et al.

Source: G3: Genes | Genomes | Genetics. Mar2025, Vol. 15 Issue 3, p1-7. 7p.

Genome assembly of Ottelia alismoides, a multiple-carbon utilisation aquatic plant.

Authors: Wang, Zheng-Feng Wu, Lin-Fang Chen, Lei et al.

Source: BMC Genomic Data. 5/23/2024, Vol. 25 Issue 1, p1-4. 4p.

Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps.

Authors: Lorenzi, Ange Legeai, Fabrice Jouan, Véronique et al.

Source: PLoS Pathogens. 4/25/2024, Vol. 20 Issue 4, p1-30. 30p.