Search Results - "Simpkins SW"

Predicting bioprocess targets of chemical compounds through integration of chemical-genetic and genetic interactions.

Authors: Simpkins SW Nelson J Deshpande R et al.

Source: PLoS computational biology [PLoS Comput Biol] 2018 Oct 30; Vol. 14 (10), pp. e1006532. Date of Electronic Publication: 2018 Oct 30 (Print Publication: 2018).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

MOSAIC: a chemical-genetic interaction data repository and web resource for exploring chemical modes of action.

Authors: Nelson J Simpkins SW Safizadeh H et al.

Source: Bioinformatics (Oxford, England) [Bioinformatics] 2018 Apr 01; Vol. 34 (7), pp. 1251-1252.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 9808944 Publication Model: Print Cited Medium: Internet ISSN: 1367-4811 (Electronic) Linking ISSN: 13674803 NLM ISO Abbreviation: Bioinformatics Subsets: MEDLINE

Improving Measures of Chemical Structural Similarity Using Machine Learning on Chemical-Genetic Interactions.

Authors: Safizadeh H Simpkins SW Nelson J et al.

Source: Journal of chemical information and modeling [J Chem Inf Model] 2021 Sep 27; Vol. 61 (9), pp. 4156-4172. Date of Electronic Publication: 2021 Jul 28.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101230060 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-960X (Electronic) Linking ISSN: 15499596 NLM ISO Abbreviation: J Chem Inf Model Subsets: MEDLINE

Accumulation of heme biosynthetic intermediates contributes to the antibacterial action of the metalloid tellurite.

Authors: Morales EH Pinto CA Luraschi R et al.

Source: Nature communications [Nat Commun] 2017 May 11; Vol. 8, pp. 15320. Date of Electronic Publication: 2017 May 11.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

A global genetic interaction network maps a wiring diagram of cellular function.

Authors: Costanzo M VanderSluis B Koch EN et al.

Source: Science (New York, N.Y.) [Science] 2016 Sep 23; Vol. 353 (6306).

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE

Massively scaled-up testing for SARS-CoV-2 RNA via next-generation sequencing of pooled and barcoded nasal and saliva samples.

Authors: Bloom JS Sathe L Munugala C et al.

Source: Nature biomedical engineering [Nat Biomed Eng] 2021 Jul; Vol. 5 (7), pp. 657-665. Date of Electronic Publication: 2021 Jul 01.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101696896 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2157-846X (Electronic) Linking ISSN: 2157846X NLM ISO Abbreviation: Nat Biomed Eng Subsets: MEDLINE

Swab-Seq: A high-throughput platform for massively scaled up SARS-CoV-2 testing.

Authors: Bloom JS Sathe L Munugala C et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2021 Mar 09. Date of Electronic Publication: 2021 Mar 09.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

Reliable and accurate diagnostics from highly multiplexed sequencing assays.

Authors: Booeshaghi AS Lubock NB Cooper AR et al.

Source: Scientific reports [Sci Rep] 2020 Dec 10; Vol. 10 (1), pp. 21759. Date of Electronic Publication: 2020 Dec 10.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

CRISPR screens in cancer spheroids identify 3D growth-specific vulnerabilities.

Authors: Han K Pierce SE Li A et al.

Source: Nature [Nature] 2020 Apr; Vol. 580 (7801), pp. 136-141. Date of Electronic Publication: 2020 Mar 11.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Using BEAN-counter to quantify genetic interactions from multiplexed barcode sequencing experiments.

Authors: Simpkins SW Deshpande R Nelson J et al.

Source: Nature protocols [Nat Protoc] 2019 Feb; Vol. 14 (2), pp. 415-440.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101284307 Publication Model: Print Cited Medium: Internet ISSN: 1750-2799 (Electronic) Linking ISSN: 17502799 NLM ISO Abbreviation: Nat Protoc Subsets: MEDLINE

Coculture of Marine Invertebrate-Associated Bacteria and Interdisciplinary Technologies Enable Biosynthesis and Discovery of a New Antibiotic, Keyicin.

Authors: Adnani N Chevrette MG Adibhatla SN et al.

Source: ACS chemical biology [ACS Chem Biol] 2017 Dec 15; Vol. 12 (12), pp. 3093-3102. Date of Electronic Publication: 2017 Nov 22.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101282906 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1554-8937 (Electronic) Linking ISSN: 15548929 NLM ISO Abbreviation: ACS Chem Biol Subsets: MEDLINE

Errata: Functional annotation of chemical libraries across diverse biological processes.

Authors: Piotrowski JS Li SC Deshpande R et al.

Source: Nature chemical biology [Nat Chem Biol] 2017 Nov 21; Vol. 13 (12), pp. 1286.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101231976 Publication Model: Print Cited Medium: Internet ISSN: 1552-4469 (Electronic) Linking ISSN: 15524450 NLM ISO Abbreviation: Nat Chem Biol Subsets: PubMed not MEDLINE

Errata: Functional annotation of chemical libraries across diverse biological processes.

Authors: Piotrowski JS Li SC Deshpande R et al.

Source: Nature chemical biology [Nat Chem Biol] 2017 Nov 21; Vol. 13 (12), pp. 1286.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101231976 Publication Model: Print Cited Medium: Internet ISSN: 1552-4469 (Electronic) Linking ISSN: 15524450 NLM ISO Abbreviation: Nat Chem Biol Subsets: PubMed not MEDLINE

Chemical Genomics, Structure Elucidation, and in Vivo Studies of the Marine-Derived Anticlostridial Ecteinamycin.

Authors: Wyche TP Alvarenga RFR Piotrowski JS et al.

Source: ACS chemical biology [ACS Chem Biol] 2017 Sep 15; Vol. 12 (9), pp. 2287-2295. Date of Electronic Publication: 2017 Jul 26.

Publication Type: Journal Article

Journal Info: Publisher: American Chemical Society Country of Publication: United States NLM ID: 101282906 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1554-8937 (Electronic) Linking ISSN: 15548929 NLM ISO Abbreviation: ACS Chem Biol Subsets: MEDLINE

Functional annotation of chemical libraries across diverse biological processes.

Authors: Piotrowski JS Li SC Deshpande R et al.

Source: Nature chemical biology [Nat Chem Biol] 2017 Sep; Vol. 13 (9), pp. 982-993. Date of Electronic Publication: 2017 Jul 24.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101231976 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1552-4469 (Electronic) Linking ISSN: 15524450 NLM ISO Abbreviation: Nat Chem Biol Subsets: MEDLINE

Chemical genomic profiling via barcode sequencing to predict compound mode of action.

Authors: Piotrowski JS Simpkins SW Li SC et al.

Source: Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2015; Vol. 1263, pp. 299-318.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Humana Press Country of Publication: United States NLM ID: 9214969 Publication Model: Print Cited Medium: Internet ISSN: 1940-6029 (Electronic) Linking ISSN: 10643745 NLM ISO Abbreviation: Methods Mol Biol Subsets: MEDLINE

Contamination of deconjugation enzymes derived from Helix pomatia with the plant bioactive compounds 3,3'-diindolylmethane, 5-methoxypsoralen, and 8-methoxypsoralen.

Authors: Ainslie-Waldman CE Simpkins SW Upadhyaya P et al.

Source: Food and chemical toxicology : an international journal published for the British Industrial Biological Research Association [Food Chem Toxicol] 2013 Dec; Vol. 62, pp. 188-93. Date of Electronic Publication: 2013 Aug 30.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Elsevier Science Ltd Country of Publication: England NLM ID: 8207483 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-6351 (Electronic) Linking ISSN: 02786915 NLM ISO Abbreviation: Food Chem Toxicol Subsets: MEDLINE

Targeted three-dimensional liquid chromatography: a versatile tool for quantitative trace analysis in complex matrices.

Authors: Simpkins SW Bedard JW Groskreutz SR et al.

Source: Journal of chromatography. A [J Chromatogr A] 2010 Dec 03; Vol. 1217 (49), pp. 7648-60. Date of Electronic Publication: 2010 Nov 01.

Publication Type: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Country of Publication: Netherlands NLM ID: 9318488 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1873-3778 (Electronic) Linking ISSN: 00219673 NLM ISO Abbreviation: J Chromatogr A Subsets: MEDLINE