Search Results - "Snyder TM"

Evaluating the utility of amino acid similarity-aware kmers to represent TCR repertoires for classification.

Authors: Kockelbergh, Hannah Evans, Shelley C. Brierley, Liam et al.

Source: PLoS Computational Biology. 4/30/2026, Vol. 22 Issue 4, p1-28. 28p.

Nucleotide context models outperform protein language models for predicting antibody affinity maturation.

Authors: Johnson, Mackenzie M. Sung, Kevin Haddox, Hugh K. et al.

Source: PLoS Computational Biology. 12/1/2025, Vol. 21 Issue 12, p1-24. 24p.

A large-scale database of T-cell receptor beta sequences and binding associations from natural and synthetic exposure to SARS-CoV-2.

Authors: Nolan S Vignali M Klinger M et al.

Source: Frontiers in immunology [Front Immunol] 2025 Feb 17; Vol. 16, pp. 1488851. Date of Electronic Publication: 2025 Feb 17 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

Magnitude and dynamics of the T-cell response to SARS-CoV-2 infection at both individual and population levels.

Authors: Snyder TM Gittelman RM Klinger M et al.

Source: Frontiers in immunology [Front Immunol] 2025 Jan 07; Vol. 15, pp. 1488860. Date of Electronic Publication: 2025 Jan 07 (Print Publication: 2024).

Publication Type: Journal Article

Journal Info: Publisher: Frontiers Research Foundation] Country of Publication: Switzerland NLM ID: 101560960 Publication Model: eCollection Cited Medium: Internet ISSN: 1664-3224 (Electronic) Linking ISSN: 16643224 NLM ISO Abbreviation: Front Immunol Subsets: MEDLINE

TCR2HLA: Calibrated inference of HLA genotypes from TCR repertoires enables identification of immunologically relevant metaclonotypes.

Authors: Mayer-Blackwell, Koshlan Minervina, Anastasia Pogorelyy, Mikhail et al.

Source: PLoS Computational Biology. 1/16/2026, Vol. 22 Issue 1, p1-22. 22p.

A SNP-based capture and clustering workflow to assess donor-derived cell-free DNA in transplantation.

Authors: Mitsunaga, Shigeki Yamada, Yohei Nguyen, Phuong Thanh et al.

Source: PLoS ONE. 2/2/2026, Vol. 21 Issue 2, p1-14. 14p.

A comprehensive review of AI methods in upper extremity/limb bone fracture detection.

Authors: Pour, Zahra Moradi Berretti, Stefano

Source: Artificial Intelligence Review; Oct2025, Vol. 58 Issue 10, p1-94, 94p

A new method for the reproducible development of aptamers (Neomers).

Authors: Meehan, Cathal Hamilton, Erika L. Mansour, Chloé G. et al.

Source: PLoS ONE. 2/12/2025, Vol. 20 Issue 2, p1-19. 19p.

Clinical Validation of a Novel T-Cell Receptor Sequencing Assay for Identification of Recent or Prior Severe Acute Respiratory Syndrome Coronavirus 2 Infection.

Authors: Dalai SC Dines JN Snyder TM et al.

Source: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America [Clin Infect Dis] 2022 Dec 19; Vol. 75 (12), pp. 2079-2087.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Oxford University Press Country of Publication: United States NLM ID: 9203213 Publication Model: Print Cited Medium: Internet ISSN: 1537-6591 (Electronic) Linking ISSN: 10584838 NLM ISO Abbreviation: Clin Infect Dis Subsets: MEDLINE

Antigen-driven expansion of public clonal T-cell populations in inflammatory bowel diseases.

Authors: Pesesky, Mitchell Bharanikumar, Ramit Bourhis, Lionel Le et al.

Source: Journal of Crohn's & Colitis. Jul2025, Vol. 19 Issue 7, p1-12. 12p.

Prediction of the risk of transplant rejection based on RNA sequencing data of PBMCs before transplantation.

Authors: Gong, Yu Wang, Yuan Takeda, Kazuyoshi et al.

Source: Scientific Reports. 8/4/2025, Vol. 15 Issue 1, p1-12. 12p.

Over‐shedding of donor‐derived cell‐free DNA at immune‐related regions into plasma of lung transplant recipient.

Authors: Luo, Jiaqi Liu, Liping Chen, Lingxi et al.

Source: Clinical & Translational Medicine. Jan2022, Vol. 12 Issue 1, p1-6. 6p.

Participant Contributions to Person-Generated Health Data Research Using Mobile Devices: Scoping Review.

Authors: Song, Shanshan Ashton, Micaela Yoo, Rebecca Hahn et al.

Source: Journal of Medical Internet Research. 2025, Vol. 27, p1-26. 26p.

Genetic/epigenetic DNA markers for linking suspects and tissues in complex crime scenes.

Authors: Mizrachi, Roy Neiman, Daniel Rosenski, Jonathan et al.

Source: Briefings in Bioinformatics. Jul2025, Vol. 26 Issue 4, p1-12. 12p.

PepTCR-Net: prediction of multi-class antigen peptides by T-cell receptor sequences with deep learning.

Authors: Le, Phi Ung, Leah Yang, Hai et al.

Source: Briefings in Bioinformatics. Jul2025, Vol. 26 Issue 4, p1-11. 11p.

Rejection Surveillance: Integrating Cell-Free DNA and Gene Expression Panels to Decrease Invasiveness in Routine Monitoring of Heart Transplant Recipients.

Authors: ALANSARI, HATEM GORTHI, JANARDHANA R.

Source: Methodist DeBakey Cardiovascular Journal. 2025, Vol. 21 Issue 3, p51-57. 7p.

Plasma NEDD9 is increased following SARS‐CoV‐2 infection and associates with indices of pulmonary vascular dysfunction.

Authors: Alba, George A. Zhou, Iris Y. Mascia, Molly et al.

Source: Pulmonary Circulation. Jan2024, Vol. 14 Issue 1, p1-6. 6p.

Neural network models for sequence-based TCR and HLA association prediction.

Authors: Liu, Si Bradley, Philip Sun, Wei

Source: PLoS Computational Biology. 11/20/2023, Vol. 19 Issue 11, p1-16. 16p.

Proof of concept for aqueous two-phase system-based extraction of cell-free DNA from plasma for liquid biopsy applications.

Authors: Meutelet, Rafaela Buerfent, Benedikt C. Hess, Timo et al.

Source: Scientific Reports. 4/2/2026, Vol. 16 Issue 1, p1-15. 15p.

Longitudinal study of immunity to SARS‐CoV2 in ocrelizumab‐treated MS patients up to 2 years after COVID‐19 vaccination.

Authors: Kister, Ilya Curtin, Ryan Piquet, Amanda L. et al.

Source: Annals of Clinical & Translational Neurology. Jul2024, Vol. 11 Issue 7, p1750-1764. 15p.