Search Results - "Solonenko NE"

Cross-family and phage-specific gene requirements for Klebsiella infection revealed by scalable RB-TnSeq genetic screens.

Authors: Gittrich, Marissa R. Sanderson, Courtney M. Noel, Cara M. et al.

Source: PLoS Genetics. 7/20/2026, Vol. 22 Issue 7, p1-26. 26p.

Benchmarking with synthetic communities provides a baseline for virus-host inferences from Hi-C proximity linking.

Authors: Shatadru RN Solonenko NE Sun CL et al.

Source: PLoS biology [PLoS Biol] 2025 Nov 20; Vol. 23 (11), pp. e3003510. Date of Electronic Publication: 2025 Nov 20 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol Subsets: MEDLINE

Type VI secretion system degeneration accelerates intestinal epithelial cell death in Escherichia coli O157:H7.

Authors: Sun, Zhibin Dong, Chao Zhou, Pengcheng et al.

Source: PLoS Pathogens. 3/3/2026, Vol. 22 Issue 3, p1-28. 28p.

Sub-daily virus sampling at the Bermuda Atlantic Time Series reveals diel and depth-structured population dynamics without community-level shifts.

Authors: Carrillo, Alfonso Hageman, Emily Chittick, Lauren et al.

Source: PLoS Biology. 3/6/2026, Vol. 24 Issue 3, p1-25. 25p.

Viruses help shape microbiome response to polyphenol rewiring of methane-suppressed peat microcosms.

Authors: Riddell V., James Shatadru, Rokaiya Nurani Smith, Garrett J. et al.

Source: PLoS Biology. 7/30/2026, Vol. 24 Issue 7, p1-26. 26p.

Isolation and characterization of 24 phages infecting the plant growth-promoting rhizobacterium Klebsiella sp. M5al.

Authors: Gittrich, Marissa R. Sanderson, Courtney M. Wainaina, James M. et al.

Source: PLoS ONE. 2/21/2025, Vol. 20 Issue 2, p1-30. 30p.

Comparative Genomic Analysis of 66 Bacteriophages Infecting Morganella morganii Strains.

Authors: Mahamud, S. M. Iqbal Oishy, Sumaiya Hossain Roy, Sattajith et al.

Source: Current Microbiology. Apr2025, Vol. 82 Issue 4, p1-15. 15p.

CAIM: coverage-based analysis for identification of microbiome.

Authors: Acheampong, Daniel A Jenjaroenpun, Piroon Wongsurawat, Thidathip et al.

Source: Briefings in Bioinformatics. Sep2024, Vol. 25 Issue 5, p1-10. 10p.

Two novel polyvalent phages: a promising approach for cross-order pathogen control in aquaculture.

Authors: Li, Chengcheng Yue, Yufei Yin, Rui et al.

Source: Virology Journal. 6/7/2025, Vol. 22 Issue 1, p1-12. 12p.

Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction.

Authors: Simon, Sophie A. Schmidt, Katharina Griesdorn, Lea et al.

Source: BMC Genomics. 12/1/2023, Vol. 24 Issue 1, p1-11. 11p.

In situ Nanopore sequencing reveals metabolic characteristics of the Qilian glacier meltwater microbiome.

Authors: Li, Xiang Zhang, Miao Dang, Chenyuan et al.

Source: Environmental Science & Pollution Research. Jul2023, Vol. 30 Issue 35, p84805-84813. 9p.

Virolithopanspermia: Might viruses be transported in rocks through space?

Authors: Bushman, Frederic D.¹ (AUTHOR) bushman@pennmedicine.upenn.edu

Source: PLoS Pathogens. 3/18/2025, Vol. 21 Issue 3, p1-5. 5p.

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CleanBar: a versatile demultiplexing tool for split-and-pool barcoding in single-cell omics.

Authors: Arnau, Vicente Ortiz-Maiques, Alicia Valero-Tebar, Juan et al.

Source: ISME Communications. 2025, Vol. 5 Issue 1, p1-11. 11p.

Metagenomic Insights into Viral Diversity from an Underexplored Khazan Creek and a Tropical Freshwater Lake.

Authors: Noronha JM Hudson SB Sharma G et al.

Source: Current microbiology [Curr Microbiol] 2026 Jan 18; Vol. 83 (2), pp. 139. Date of Electronic Publication: 2026 Jan 18.

Publication Type: Journal Article

Journal Info: Publisher: Springer International Country of Publication: United States NLM ID: 7808448 Publication Model: Electronic Cited Medium: Internet ISSN: 1432-0991 (Electronic) Linking ISSN: 03438651 NLM ISO Abbreviation: Curr Microbiol Subsets: MEDLINE

Bacteriophages in nature: recent advances in research tools and diverse environmental and biotechnological applications.

Authors: Bisen, Monish Kharga, Kusum Mehta, Sakshi et al.

Source: Environmental Science & Pollution Research. Mar2024, Vol. 31 Issue 15, p22199-22242. 44p.

Application of machine learning in bacteriophage research.

Authors: Nami, Yousef Imeni, Nazila Panahi, Bahman

Source: BMC Microbiology. 6/26/2021, Vol. 21 Issue 1, p1-8. 8p.

Phylogenomic analysis expands the known repertoire of single-stranded DNA viruses in benthic zones of the South Indian Ocean.

Authors: Bezuidt, Oliver K I Makhalanyane, Thulani P

Source: ISME Communications. Jan2024, Vol. 4 Issue 1, p1-11. 11p.

Detection of hemolytic Shiga toxin-producing Escherichia coli in fresh vegetables and efficiency of phytogenically synthesized silver nanoparticles by Syzygium aromaticum extract and gamma radiation against isolated pathogens.

Authors: El-Bastawisy, Hanan S. El-Sayyad, Gharieb S. Abu Safe, Feriala A.

Source: BMC Microbiology. 9/18/2023, Vol. 23 Issue 1, p1-16. 16p.

Astrovirology: how viruses enhance our understanding of life in the Universe.

Authors: Trubl, Gareth Stedman, Kenneth M. Bywaters, Kathryn F. et al.

Source: International Journal of Astrobiology. Aug2023, Vol. 22 Issue 4, p247-271. 25p.