Search Results - "Strattan JS"

Data navigation on the ENCODE portal.

Authors: Kagda MS Lam B Litton C et al.

Source: Nature communications [Nat Commun] 2025 Oct 30; Vol. 16 (1), pp. 9592. Date of Electronic Publication: 2025 Oct 30.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.

Authors: Schreiber JM Boix CA Wook Lee J et al.

Corporate Authors: Schreiber JM Boix CA Wook Lee J et al.

Source: Genome biology [Genome Biol] 2025 Feb 13; Vol. 26 (1), pp. 31. Date of Electronic Publication: 2025 Feb 13.

Publication Type: Published Erratum

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE; PubMed not MEDLINE

The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles.

Authors: Schreiber JM Boix CA Wook Lee J et al.

Corporate Authors: Schreiber JM Boix CA Wook Lee J et al.

Source: Genome biology [Genome Biol] 2023 Apr 18; Vol. 24 (1), pp. 79. Date of Electronic Publication: 2023 Apr 18.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE

New developments on the Encyclopedia of DNA Elements (ENCODE) data portal.

Authors: Luo Y Hitz BC Gabdank I et al.

Source: Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D882-D889.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

The ENCODE Uniform Analysis Pipelines.

Authors: Hitz BC Lee JW Jolanki O et al.

Source: Research square [Res Sq] 2023 Jul 19. Date of Electronic Publication: 2023 Jul 19.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101768035 Publication Model: Electronic Cited Medium: Internet ISSN: 2693-5015 (Electronic) Linking ISSN: 26935015 NLM ISO Abbreviation: Res Sq Subsets: PubMed not MEDLINE

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.

Authors: Reese F Williams B Balderrama-Gutierrez G et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 May 16. Date of Electronic Publication: 2023 May 16.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

The ENCODE Uniform Analysis Pipelines.

Authors: Hitz BC Jin-Wook L Jolanki O et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Apr 06. Date of Electronic Publication: 2023 Apr 06.

Publication Type: Preprint; Journal Article

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models.

Authors: Rozowsky J Gao J Borsari B et al.

Source: Cell [Cell] 2023 Mar 30; Vol. 186 (7), pp. 1493-1511.e40.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

The Encyclopedia of DNA elements (ENCODE): data portal update.

Authors: Davis CA Hitz BC Sloan CA et al.

Source: Nucleic acids research [Nucleic Acids Res] 2018 Jan 04; Vol. 46 (D1), pp. D794-D801.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res

Prevention of data duplication for high throughput sequencing repositories.

Authors: Gabdank I Chan ET Davidson JM et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2018 Jan 01; Vol. 2018.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata.

Authors: Hitz BC Rowe LD Podduturi NR et al.

Source: PloS one [PLoS One] 2017 Apr 12; Vol. 12 (4), pp. e0175310. Date of Electronic Publication: 2017 Apr 12 (Print Publication: 2017).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Principles of metadata organization at the ENCODE data coordination center.

Authors: Hong EL Sloan CA Chan ET et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2016 Mar 15; Vol. 2016. Date of Electronic Publication: 2016 Mar 15 (Print Publication: 2016).

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

ENCODE data at the ENCODE portal.

Authors: Sloan CA Chan ET Davidson JM et al.

Source: Nucleic acids research [Nucleic Acids Res] 2016 Jan 04; Vol. 44 (D1), pp. D726-32. Date of Electronic Publication: 2015 Nov 02.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE

Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.

Authors: Gorkin DU Barozzi I Zhao Y et al.

Source: Nature [Nature] 2021 Jan; Vol. 589 (7842), pp. E4.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; PubMed not MEDLINE

Data Sanitization to Reduce Private Information Leakage from Functional Genomics.

Authors: Gürsoy G Emani P Brannon CM et al.

Source: Cell [Cell] 2020 Nov 12; Vol. 183 (4), pp. 905-917.e16.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0413066 Publication Model: Print Cited Medium: Internet ISSN: 1097-4172 (Electronic) Linking ISSN: 00928674 NLM ISO Abbreviation: Cell Subsets: MEDLINE

Author Correction: An atlas of dynamic chromatin landscapes in mouse fetal development.

Authors: Gorkin DU Barozzi I Zhao Y et al.

Source: Nature [Nature] 2020 Oct; Vol. 586 (7831), pp. E31.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE; PubMed not MEDLINE

Ontology application and use at the ENCODE DCC.

Authors: Malladi VS Erickson DT Podduturi NR et al.

Source: Database : the journal of biological databases and curation [Database (Oxford)] 2015 Mar 16; Vol. 2015. Date of Electronic Publication: 2015 Mar 16 (Print Publication: 2015).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Review

Journal Info: Publisher: Oxford Journals Country of Publication: England NLM ID: 101517697 Publication Model: Electronic-Print Cited Medium: Internet ISSN: 1758-0463 (Electronic) Linking ISSN: 17580463 NLM ISO Abbreviation: Database (Oxford) Subsets: MEDLINE

An atlas of dynamic chromatin landscapes in mouse fetal development.

Authors: Gorkin DU Barozzi I Zhao Y et al.

Source: Nature [Nature] 2020 Jul; Vol. 583 (7818), pp. 744-751. Date of Electronic Publication: 2020 Jul 29.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

CNN-Peaks: ChIP-Seq peak detection pipeline using convolutional neural networks that imitate human visual inspection.

Authors: Oh D Strattan JS Hur JK et al.

Source: Scientific reports [Sci Rep] 2020 May 13; Vol. 10 (1), pp. 7933. Date of Electronic Publication: 2020 May 13.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE

The ENCODE Portal as an Epigenomics Resource.

Authors: Jou J Gabdank I Luo Y et al.

Source: Current protocols in bioinformatics [Curr Protoc Bioinformatics] 2019 Dec; Vol. 68 (1), pp. e89.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Country of Publication: United States NLM ID: 101157830 Publication Model: Print Cited Medium: Internet ISSN: 1934-340X (Electronic) Linking ISSN: 19343396 NLM ISO Abbreviation: Curr Protoc Bioinformatics Subsets: MEDLINE