Search Results - "Talevich E"

Detection of Neoplasms by Metagenomic Next-Generation Sequencing of Cerebrospinal Fluid.

Authors: Gu W Rauschecker AM Hsu E et al.

Source: JAMA neurology [JAMA Neurol] 2021 Nov 01; Vol. 78 (11), pp. 1355-1366.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: American Medical Association Country of Publication: United States NLM ID: 101589536 Publication Model: Print Cited Medium: Internet ISSN: 2168-6157 (Electronic) Linking ISSN: 21686149 NLM ISO Abbreviation: JAMA Neurol Subsets: MEDLINE

Genomic profiling of combined hepatocellular-cholangiocarcinoma reveals similar genetics to hepatocellular carcinoma.

Authors: Joseph NM Tsokos CG Umetsu SE et al.

Source: The Journal of pathology [J Pathol] 2019 Jun; Vol. 248 (2), pp. 164-178. Date of Electronic Publication: 2019 Mar 08.

Publication Type: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: John Wiley And Sons Country of Publication: England NLM ID: 0204634 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1096-9896 (Electronic) Linking ISSN: 00223417 NLM ISO Abbreviation: J Pathol Subsets: MEDLINE

The tumor suppressor BAP1 cooperates with BRAFV600E to promote tumor formation in cutaneous melanoma.

Authors: Webster JD Pham TH Wu X et al.

Source: Pigment cell & melanoma research [Pigment Cell Melanoma Res] 2019 Mar; Vol. 32 (2), pp. 269-279. Date of Electronic Publication: 2018 Sep 24.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Blackwell Munksgaard Country of Publication: England NLM ID: 101318927 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1755-148X (Electronic) Linking ISSN: 17551471 NLM ISO Abbreviation: Pigment Cell Melanoma Res

A recurrent kinase domain mutation in PRKCA defines chordoid glioma of the third ventricle.

Authors: Goode B Mondal G Hyun M et al.

Source: Nature communications [Nat Commun] 2018 Feb 23; Vol. 9 (1), pp. 810. Date of Electronic Publication: 2018 Feb 23.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Targeted next-generation sequencing of pediatric neuro-oncology patients improves diagnosis, identifies pathogenic germline mutations, and directs targeted therapy.

Authors: Kline CN Joseph NM Grenert JP et al.

Source: Neuro-oncology [Neuro Oncol] 2017 May 01; Vol. 19 (5), pp. 699-709.

Publication Type: Journal Article

Journal Info: Publisher: Oxford University Press Country of Publication: England NLM ID: 100887420 Publication Model: Print Cited Medium: Internet ISSN: 1523-5866 (Electronic) Linking ISSN: 15228517 NLM ISO Abbreviation: Neuro Oncol Subsets: MEDLINE

CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing.

Authors: Talevich E Shain AH Botton T et al.

Source: PLoS computational biology [PLoS Comput Biol] 2016 Apr 21; Vol. 12 (4), pp. e1004873. Date of Electronic Publication: 2016 Apr 21 (Print Publication: 2016).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Validation Study

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Exome sequencing of desmoplastic melanoma identifies recurrent NFKBIE promoter mutations and diverse activating mutations in the MAPK pathway.

Authors: Shain AH Garrido M Botton T et al.

Source: Nature genetics [Nat Genet] 2015 Oct; Vol. 47 (10), pp. 1194-9. Date of Electronic Publication: 2015 Sep 07.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids.

Authors: Gu W Talevich E Hsu E et al.

Source: Genome medicine [Genome Med] 2021 Jun 01; Vol. 13 (1), pp. 98. Date of Electronic Publication: 2021 Jun 01.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X (Electronic) Linking ISSN: 1756994X NLM ISO Abbreviation: Genome Med Subsets: MEDLINE

Activating MET kinase rearrangements in melanoma and Spitz tumours.

Authors: Yeh I Botton T Talevich E et al.

Source: Nature communications [Nat Commun] 2015 May 27; Vol. 6, pp. 7174. Date of Electronic Publication: 2015 May 27.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

ProKinO: a unified resource for mining the cancer kinome.

Authors: McSkimming DI Dastgheib S Talevich E et al.

Source: Human mutation [Hum Mutat] 2015 Feb; Vol. 36 (2), pp. 175-86.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Wiley-Liss Country of Publication: United States NLM ID: 9215429 Publication Model: Print Cited Medium: Internet ISSN: 1098-1004 (Electronic) Linking ISSN: 10597794 NLM ISO Abbreviation: Hum Mutat Subsets: MEDLINE

Prediction and prioritization of rare oncogenic mutations in the cancer Kinome using novel features and multiple classifiers.

Authors: U M Talevich E Katiyar S et al.

Source: PLoS computational biology [PLoS Comput Biol] 2014 Apr 17; Vol. 10 (4), pp. e1003545. Date of Electronic Publication: 2014 Apr 17 (Print Publication: 2014).

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Structural and evolutionary adaptation of rhoptry kinases and pseudokinases, a family of coccidian virulence factors.

Authors: Talevich E Kannan N

Source: BMC evolutionary biology [BMC Evol Biol] 2013 Jun 06; Vol. 13, pp. 117. Date of Electronic Publication: 2013 Jun 06.

Publication Type: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100966975 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2148 (Electronic) Linking ISSN: 14712148 NLM ISO Abbreviation: BMC Evol Biol Subsets: MEDLINE

Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython.

Authors: Talevich E Invergo BM Cock PJ et al.

Source: BMC bioinformatics [BMC Bioinformatics] 2012 Aug 21; Vol. 13, pp. 209. Date of Electronic Publication: 2012 Aug 21.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE

Structural and evolutionary divergence of eukaryotic protein kinases in Apicomplexa.

Authors: Talevich E Mirza A Kannan N

Source: BMC evolutionary biology [BMC Evol Biol] 2011 Nov 02; Vol. 11, pp. 321. Date of Electronic Publication: 2011 Nov 02.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100966975 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2148 (Electronic) Linking ISSN: 14712148 NLM ISO Abbreviation: BMC Evol Biol Subsets: MEDLINE

Co-conserved features associated with cis regulation of ErbB tyrosine kinases.

Authors: Mirza A Mustafa M Talevich E et al.

Source: PloS one [PLoS One] 2010 Dec 13; Vol. 5 (12), pp. e14310. Date of Electronic Publication: 2010 Dec 13.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: Electronic Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE

Genetic Heterogeneity of BRAF Fusion Kinases in Melanoma Affects Drug Responses.

Authors: Botton T Talevich E Mishra VK et al.

Source: Cell reports [Cell Rep] 2019 Oct 15; Vol. 29 (3), pp. 573-588.e7.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101573691 Publication Model: Print Cited Medium: Internet ISSN: 2211-1247 (Electronic) NLM ISO Abbreviation: Cell Rep Subsets: MEDLINE

Adenomatoid tumors of the male and female genital tract are defined by TRAF7 mutations that drive aberrant NF-kB pathway activation.

Authors: Goode B Joseph NM Stevers M et al.

Source: Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc [Mod Pathol] 2018 Apr; Vol. 31 (4), pp. 660-673. Date of Electronic Publication: 2017 Nov 17.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 8806605 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1530-0285 (Electronic) Linking ISSN: 08933952 NLM ISO Abbreviation: Mod Pathol Subsets: MEDLINE

Gene Copy Number Estimation from Targeted Next-Generation Sequencing of Prostate Cancer Biopsies: Analytic Validation and Clinical Qualification.

Authors: Seed G Yuan W Mateo J et al.

Source: Clinical cancer research : an official journal of the American Association for Cancer Research [Clin Cancer Res] 2017 Oct 15; Vol. 23 (20), pp. 6070-6077. Date of Electronic Publication: 2017 Jul 27.

Publication Type: Journal Article

Journal Info: Publisher: American Association for Cancer Research Country of Publication: United States NLM ID: 9502500 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-3265 (Electronic) Linking ISSN: 10780432 NLM ISO Abbreviation: Clin Cancer Res Subsets: MEDLINE

Genomic profiling of breast secretory carcinomas reveals distinct genetics from other breast cancers and similarity to mammary analog secretory carcinomas.

Authors: Krings G Joseph NM Bean GR et al.

Source: Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc [Mod Pathol] 2017 Aug; Vol. 30 (8), pp. 1086-1099. Date of Electronic Publication: 2017 May 26.

Publication Type: Journal Article; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 8806605 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1530-0285 (Electronic) Linking ISSN: 08933952 NLM ISO Abbreviation: Mod Pathol Subsets: MEDLINE

Genomic profiling of malignant peritoneal mesothelioma reveals recurrent alterations in epigenetic regulatory genes BAP1, SETD2, and DDX3X.

Authors: Joseph NM Chen YY Nasr A et al.

Source: Modern pathology : an official journal of the United States and Canadian Academy of Pathology, Inc [Mod Pathol] 2017 Feb; Vol. 30 (2), pp. 246-254. Date of Electronic Publication: 2016 Nov 04.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 8806605 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1530-0285 (Electronic) Linking ISSN: 08933952 NLM ISO Abbreviation: Mod Pathol Subsets: MEDLINE