Search Results - "Theesfeld CL"

Atlas of glomerular disease-specific genetic effects on blood transcriptome.

Authors: Liu L Wang C Kravets O et al.

Corporate Authors: Liu L Wang C Kravets O et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2026 Jul 20. Date of Electronic Publication: 2026 Jul 20.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

Variant-resolved prediction of context-specific isoform variation with a graph-based attention model.

Authors: Litman A Pan Z Sokolova K et al.

Source: Cell genomics [Cell Genom] 2026 Apr 08; Vol. 6 (4), pp. 101126. Date of Electronic Publication: 2026 Jan 16.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: MEDLINE

Single-cell profiling reveals epithelial and immune responses in BK polyomavirus-infected human kidney biopsies.

Authors: Marvin T Sealfon R McCown PJ et al.

Source: JCI insight [JCI Insight] 2026 Mar 12; Vol. 11 (8). Date of Electronic Publication: 2026 Mar 12 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: American Society for Clinical Investigation Country of Publication: United States NLM ID: 101676073 Publication Model: eCollection Cited Medium: Internet ISSN: 2379-3708 (Electronic) Linking ISSN: 23793708 NLM ISO Abbreviation: JCI Insight Subsets: MEDLINE

HumanBase: an interactive AI platform for human biology.

Authors: Sealfon RSG Theesfeld CL Funk J et al.

Source: Nature methods [Nat Methods] 2026 Mar; Vol. 23 (3), pp. 483-484.

Publication Type: Letter

Journal Info: Publisher: Nature Pub. Group Country of Publication: United States NLM ID: 101215604 Publication Model: Print Cited Medium: Internet ISSN: 1548-7105 (Electronic) Linking ISSN: 15487091 NLM ISO Abbreviation: Nat Methods Subsets: MEDLINE; In Process

3D chromatin structures precede genome activation in Drosophila embryogenesis.

Authors: Dolsten GA Cofer EM Bing XY et al.

Source: Cell genomics [Cell Genom] 2025 Nov 12; Vol. 5 (11), pp. 101002. Date of Electronic Publication: 2025 Sep 15.

Publication Type: Journal Article

Journal Info: Publisher: Elsevier, Inc Country of Publication: United States NLM ID: 9918284260106676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-979X (Electronic) Linking ISSN: 2666979X NLM ISO Abbreviation: Cell Genom Subsets: MEDLINE

Decomposition of phenotypic heterogeneity in autism reveals underlying genetic programs.

Authors: Litman A Sauerwald N Green Snyder L et al.

Source: Nature genetics [Nat Genet] 2025 Jul; Vol. 57 (7), pp. 1611-1619. Date of Electronic Publication: 2025 Jul 09.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

CXCR4⁺ mammary gland macrophageal niche promotes tumor initiating cell activity and immune suppression during tumorigenesis.

Authors: Lee E Hong JJ Samcam Vargas G et al.

Source: Nature communications [Nat Commun] 2025 May 25; Vol. 16 (1), pp. 4854. Date of Electronic Publication: 2025 May 25.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Decomposition of phenotypic heterogeneity in autism reveals distinct and coherent genetic programs.

Authors: Litman A Sauerwald N Snyder LG et al.

Source: MedRxiv : the preprint server for health sciences [medRxiv] 2024 Aug 16. Date of Electronic Publication: 2024 Aug 16.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE

Deciphering missense coding variants with AlphaMissense.

Authors: Pan Z Theesfeld CL

Source: Kidney international [Kidney Int] 2024 Aug; Vol. 106 (2), pp. 175-178. Date of Electronic Publication: 2024 Apr 10.

Publication Type: Letter; Comment

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 0323470 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1523-1755 (Electronic) Linking ISSN: 00852538 NLM ISO Abbreviation: Kidney Int Subsets: MEDLINE

Atlas of primary cell-type-specific sequence models of gene expression and variant effects.

Authors: Sokolova K Theesfeld CL Wong AK et al.

Source: Cell reports methods [Cell Rep Methods] 2023 Sep 25; Vol. 3 (9), pp. 100580. Date of Electronic Publication: 2023 Sep 12.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Inc Country of Publication: United States NLM ID: 9918227360606676 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2667-2375 (Electronic) Linking ISSN: 26672375 NLM ISO Abbreviation: Cell Rep Methods Subsets: MEDLINE

Author Correction: Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.

Authors: Chen X Wang Y Cappuccio A et al.

Source: Nature computational science [Nat Comput Sci] 2023 Sep; Vol. 3 (9), pp. 805.

Publication Type: Published Erratum

Journal Info: Publisher: Springer Nature Country of Publication: United States NLM ID: 101775476 Publication Model: Print Cited Medium: Internet ISSN: 2662-8457 (Electronic) Linking ISSN: 26628457 NLM ISO Abbreviation: Nat Comput Sci Subsets: MEDLINE; PubMed not MEDLINE

Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development.

Authors: Zhou J Schor IE Yao V et al.

Source: PLoS genetics [PLoS Genet] 2019 Sep 25; Vol. 15 (9), pp. e1008382. Date of Electronic Publication: 2019 Sep 25 (Print Publication: 2019).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE

Mapping disease regulatory circuits at cell-type resolution from single-cell multiomics data.

Authors: Chen X Wang Y Cappuccio A et al.

Source: Nature computational science [Nat Comput Sci] 2023 Jul; Vol. 3 (7), pp. 644-657. Date of Electronic Publication: 2023 Jul 25.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: United States NLM ID: 101775476 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2662-8457 (Electronic) Linking ISSN: 26628457 NLM ISO Abbreviation: Nat Comput Sci Subsets: PubMed not MEDLINE

Decoding disease: from genomes to networks to phenotypes.

Authors: Wong AK Sealfon RSG Theesfeld CL et al.

Source: Nature reviews. Genetics [Nat Rev Genet] 2021 Dec; Vol. 22 (12), pp. 774-790. Date of Electronic Publication: 2021 Aug 02.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Review

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 100962779 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1471-0064 (Electronic) Linking ISSN: 14710056 NLM ISO Abbreviation: Nat Rev Genet Subsets: MEDLINE

Modeling transcriptional regulation of model species with deep learning.

Authors: Cofer EM Raimundo J Tadych A et al.

Source: Genome research [Genome Res] 2021 Jun; Vol. 31 (6), pp. 1097-1105. Date of Electronic Publication: 2021 Apr 22.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE

Tissue-specific enhancer functional networks for associating distal regulatory regions to disease.

Authors: Chen X Zhou J Zhang R et al.

Source: Cell systems [Cell Syst] 2021 Apr 21; Vol. 12 (4), pp. 353-362.e6. Date of Electronic Publication: 2021 Mar 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101656080 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2405-4720 (Electronic) Linking ISSN: 24054712 NLM ISO Abbreviation: Cell Syst Subsets: MEDLINE

Genome-wide landscape of RNA-binding protein target site dysregulation reveals a major impact on psychiatric disorder risk.

Authors: Park CY Zhou J Wong AK et al.

Source: Nature genetics [Nat Genet] 2021 Feb; Vol. 53 (2), pp. 166-173. Date of Electronic Publication: 2021 Jan 18.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Nature Pub. Co Country of Publication: United States NLM ID: 9216904 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1546-1718 (Electronic) Linking ISSN: 10614036 NLM ISO Abbreviation: Nat Genet Subsets: MEDLINE

Modeling molecular development of breast cancer in canine mammary tumors.

Authors: Graim K Gorenshteyn D Robinson DG et al.

Source: Genome research [Genome Res] 2021 Feb; Vol. 31 (2), pp. 337-347. Date of Electronic Publication: 2020 Dec 23.

Publication Type: Journal Article

Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE; PubMed not MEDLINE

Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid.

Authors: Iserman C Roden CA Boerneke MA et al.

Source: Molecular cell [Mol Cell] 2020 Dec 17; Vol. 80 (6), pp. 1078-1091.e6. Date of Electronic Publication: 2020 Nov 27.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol Cell Subsets: MEDLINE

SARS-CoV-2 receptor networks in diabetic and COVID-19-associated kidney disease.

Authors: Menon R Otto EA Sealfon R et al.

Source: Kidney international [Kidney Int] 2020 Dec; Vol. 98 (6), pp. 1502-1518. Date of Electronic Publication: 2020 Oct 08.

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't

Journal Info: Publisher: Elsevier Country of Publication: United States NLM ID: 0323470 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1523-1755 (Electronic) Linking ISSN: 00852538 NLM ISO Abbreviation: Kidney Int Subsets: MEDLINE