Search Results - "Treeck M"

545P HIBRID: Histology and ct-DNA based risk-stratification with deep learning.

Authors: Loeffler, C.M.L. Sainath, S. Jiang, X. et al.

Source: Annals of Oncology. 2024 Supplement 2, Vol. 35, pS454-S454. 1p.

FIKK1, a member of the FIKK kinase family, phosphorylates VAR2CSA and regulates adhesion of Plasmodium falciparum-infected erythrocytes to the placental receptor CSA.

Authors: Gamain B Semblat JP Eavis H et al.

Source: PLoS pathogens [PLoS Pathog] 2026 Jul 29; Vol. 22 (7), pp. e1014108. Date of Electronic Publication: 2026 Jul 29 (Print Publication: 2026).

Publication Type: Journal Article

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE

Physiological febrile heat stress increases cytoadhesion through increased protein trafficking of Plasmodium falciparum surface proteins into the red blood cell.

Authors: Jones D Belda H Broncel M et al.

Source: ELife [Elife] 2026 May 13; Vol. 14. Date of Electronic Publication: 2026 May 13.

Publication Type: Journal Article

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Benchmarking foundation models as feature extractors for weakly supervised computational pathology.

Authors: Neidlinger P El Nahhas OSM Muti HS et al.

Source: Nature biomedical engineering [Nat Biomed Eng] 2026 Jun; Vol. 10 (6), pp. 1113-1123. Date of Electronic Publication: 2025 Oct 01.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101696896 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2157-846X (Electronic) Linking ISSN: 2157846X NLM ISO Abbreviation: Nat Biomed Eng Subsets: MEDLINE

A software pipeline for medical information extraction with large language models, open source and suitable for oncology.

Authors: Wiest IC Wolf F Leßmann ME et al.

Source: NPJ precision oncology [NPJ Precis Oncol] 2025 Sep 17; Vol. 9 (1), pp. 313. Date of Electronic Publication: 2025 Sep 17.

Publication Type: Journal Article; Review

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101708166 Publication Model: Electronic Cited Medium: Print ISSN: 2397-768X (Print) Linking ISSN: 2397768X NLM ISO Abbreviation: NPJ Precis Oncol Subsets: PubMed not MEDLINE

HIBRID: histology-based risk-stratification with deep learning and ctDNA in colorectal cancer.

Authors: Loeffler CML Bando H Sainath S et al.

Source: Nature communications [Nat Commun] 2025 Aug 14; Vol. 16 (1), pp. 7561. Date of Electronic Publication: 2025 Aug 14.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

GRA12 is a common virulence factor across Toxoplasma gondii strains and mouse subspecies.

Authors: Torelli F Butterworth S Lockyer E et al.

Source: Nature communications [Nat Commun] 2025 Apr 16; Vol. 16 (1), pp. 3570. Date of Electronic Publication: 2025 Apr 16.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Weakly Supervised Deep Learning Can Analyze Focal Liver Lesions in Contrast-Enhanced Ultrasound.

Authors: Oezsoy A Brooks JA van Treeck M et al.

Source: Digestion [Digestion] 2025; Vol. 106 (6), pp. 502-514. Date of Electronic Publication: 2025 Mar 06.

Publication Type: Journal Article

Journal Info: Publisher: Karger Country of Publication: Switzerland NLM ID: 0150472 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1421-9867 (Electronic) Linking ISSN: 00122823 NLM ISO Abbreviation: Digestion Subsets: MEDLINE

Paracrine rescue of MYR1-deficient Toxoplasma gondii mutants reveals limitations of pooled in vivo CRISPR screens.

Authors: Torelli F da Fonseca DM Butterworth SW et al.

Source: ELife [Elife] 2024 Dec 10; Vol. 13. Date of Electronic Publication: 2024 Dec 10.

Publication Type: Journal Article

Journal Info: Publisher: eLife Sciences Publications, Ltd Country of Publication: England NLM ID: 101579614 Publication Model: Electronic Cited Medium: Internet ISSN: 2050-084X (Electronic) Linking ISSN: 2050084X NLM ISO Abbreviation: Elife Subsets: MEDLINE

Publisher Correction: Toxoplasma effector TgROP1 establishes membrane contact sites with the endoplasmic reticulum during infection.

Authors: Mehra C Alvarado Valverde J Matias AMN et al.

Source: Nature microbiology [Nat Microbiol] 2026 Feb; Vol. 11 (2), pp. 610.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE; In Process

Toxoplasma effector TgROP1 establishes membrane contact sites with the endoplasmic reticulum during infection.

Authors: Mehra C Alvarado Valverde J Matias AMN et al.

Source: Nature microbiology [Nat Microbiol] 2025 Dec; Vol. 10 (12), pp. 3331-3345. Date of Electronic Publication: 2025 Nov 25.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE

Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types.

Authors: Loeffler CML El Nahhas OSM Muti HS et al.

Source: BMC biology [BMC Biol] 2024 Oct 08; Vol. 22 (1), pp. 225. Date of Electronic Publication: 2024 Oct 08.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007 (Electronic) Linking ISSN: 17417007 NLM ISO Abbreviation: BMC Biol Subsets: MEDLINE

Vision-language models for automated video analysis and documentation in laparoscopic surgery: a proof-of-concept study.

Authors: Stueker EH Kolbinger FR Saldanha OL et al.

Source: International journal of surgery (London, England) [Int J Surg] 2025 Nov 01; Vol. 111 (11), pp. 7777-7786. Date of Electronic Publication: 2025 Jul 17.

Publication Type: Journal Article; Observational Study; Comparative Study

Journal Info: Publisher: Wolters Kluwer Health, Inc Country of Publication: United States NLM ID: 101228232 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1743-9159 (Electronic) Linking ISSN: 17439159 NLM ISO Abbreviation: Int J Surg Subsets: MEDLINE

Artificial intelligence predicts outcome-related molecular profiles and vascular invasion in hepatocellular carcinoma.

Authors: Seraphin TP Mesropian A Žigutytė L et al.

Source: JHEP reports : innovation in hepatology [JHEP Rep] 2025 Sep 11; Vol. 7 (12), pp. 101592. Date of Electronic Publication: 2025 Sep 11 (Print Publication: 2025).

Publication Type: Journal Article

Journal Info: Publisher: Elsevier B.V Country of Publication: Netherlands NLM ID: 101761237 Publication Model: eCollection Cited Medium: Internet ISSN: 2589-5559 (Electronic) Linking ISSN: 25895559 NLM ISO Abbreviation: JHEP Rep Subsets: PubMed not MEDLINE

Deep learning for dual detection of microsatellite instability and POLE mutations in colorectal cancer histopathology.

Authors: Gustav M Reitsam NG Carrero ZI et al.

Source: NPJ precision oncology [NPJ Precis Oncol] 2024 May 23; Vol. 8 (1), pp. 115. Date of Electronic Publication: 2024 May 23.

Publication Type: Journal Article

Journal Info: Publisher: Springer Nature Country of Publication: England NLM ID: 101708166 Publication Model: Electronic Cited Medium: Print ISSN: 2397-768X (Print) Linking ISSN: 2397768X NLM ISO Abbreviation: NPJ Precis Oncol Subsets: PubMed not MEDLINE

A screen for Plasmodium falciparum sporozoite surface protein binding to human hepatocyte surface receptors identifies novel host-pathogen interactions.

Authors: Segireddy RR Belda H Yang ASP et al.

Source: Malaria journal [Malar J] 2024 May 16; Vol. 23 (1), pp. 151. Date of Electronic Publication: 2024 May 16.

Publication Type: Journal Article

Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101139802 Publication Model: Electronic Cited Medium: Internet ISSN: 1475-2875 (Electronic) Linking ISSN: 14752875 NLM ISO Abbreviation: Malar J Subsets: MEDLINE

Author Correction: Regression-based Deep-Learning predicts molecular biomarkers from pathology slides.

Authors: El Nahhas OSM Loeffler CML Carrero ZI et al.

Source: Nature communications [Nat Commun] 2024 Feb 29; Vol. 15 (1), pp. 1868. Date of Electronic Publication: 2024 Feb 29.

Publication Type: Published Erratum

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE; PubMed not MEDLINE

Regression-based Deep-Learning predicts molecular biomarkers from pathology slides.

Authors: El Nahhas OSM Loeffler CML Carrero ZI et al.

Source: Nature communications [Nat Commun] 2024 Feb 10; Vol. 15 (1), pp. 1253. Date of Electronic Publication: 2024 Feb 10.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Assessing genotype-phenotype correlations in colorectal cancer with deep learning: a multicentre cohort study.

Authors: Gustav M van Treeck M Reitsam NG et al.

Source: The Lancet. Digital health [Lancet Digit Health] 2025 Aug; Vol. 7 (8), pp. 100891. Date of Electronic Publication: 2025 Aug 19.

Publication Type: Journal Article; Multicenter Study

Journal Info: Publisher: Elsevier Ltd Country of Publication: England NLM ID: 101751302 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2589-7500 (Electronic) Linking ISSN: 25897500 NLM ISO Abbreviation: Lancet Digit Health Subsets: MEDLINE

The fast-evolving FIKK kinase family of Plasmodium falciparum can be inhibited by a single compound.

Authors: Belda H Bradley D Christodoulou E et al.

Source: Nature microbiology [Nat Microbiol] 2025 Jun; Vol. 10 (6), pp. 1463-1483. Date of Electronic Publication: 2025 May 19.

Publication Type: Journal Article

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101674869 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2058-5276 (Electronic) Linking ISSN: 20585276 NLM ISO Abbreviation: Nat Microbiol Subsets: MEDLINE