Search Results - "Zemla, Adam"

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GeneSV - an Approach to Help Characterize Possible Variations in Genomic and Protein Sequences.

Authors: Zemla, Adam Kostova, Tanya Gorchakov, Rodion et al.

Source: Bioinformatics & Biology Insights. 2014, Issue 8, p1-16. 16p.

StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase.

Authors: Zemla, Adam T. Lang, Dorothy M. Kostova, Tanya et al.

Source: BMC Bioinformatics. 2011, Vol. 12 Issue 1, p226-242. 17p.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

Authors: Dongying Wu Hugenholtz, Philip Mavromatis, Konstantinos et al.

Source: Nature. 12/24/2009, Vol. 462 Issue 7276, p1056-1060. 5p. 2 Diagrams, 1 Chart, 2 Graphs.

Subjects: Genomics, Archaebacteria, Bacteria, Genomes, Phylogeny, Biological evolution, Microorganisms, Fungus-bacterium relationships, Microbiology

A study of quality measures for protein threading models.

Authors: Cristobal, Susana Zemla, Adam Fischer, Daniel et al.

Source: BMC Bioinformatics. 2001, Vol. 2, p5-15. 15p. 3 Diagrams, 3 Charts, 1 Graph.

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On the role of the degradation rates for the dominance of the fittest in Eigen's quasispecies model.

Authors: Kostova, Tanya Zhou, Carol Zemla, Adam

Source: Journal of Biological Dynamics; Sep2011, Vol. 5 Issue 5, p531-548, 18p

Practical applications of structural genomics technologies for mutagen research

Authors: Zemla, Adam Segelke, Brent W.

Source: Mutation Research - Genetic Toxicology & Environmental Mutagenesis. Jun2011, Vol. 722 Issue 2, p165-170. 6p.

Comparative genomics tools applied to bioterrorism defence.

Authors: Slezak, Tom Kuczmarski, Tom Ott, Linda et al.

Source: Briefings in Bioinformatics; Jun2003, Vol. 4 Issue 2, p133, 17p

Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies.

Authors: Avila-Herrera, Aram Kimbrel, Jeffrey A. Manuel Martí, Jose et al.

Source: PLoS ONE. 1/25/2024, Vol. 19 Issue 1, p1-19. 19p.

Identification of a Novel Drug Lead That Inhibits HCV Infection and Cell-to-Cell Transmission by Targeting the HCV E2 Glycoprotein.

Authors: Al Olaby, Reem R. Cocquerel, Laurence Zemla, Adam et al.

Source: PLoS ONE. Oct2014, Vol. 9 Issue 10, p1-20. 20p.

Large-scale application of free energy perturbation calculations for antibody design.

Authors: Zhu, Fangqiang Bourguet, Feliza A. Bennett, William F. D. et al.

Source: Scientific Reports. 7/21/2022, Vol. 12 Issue 1, p1-14. 14p.

Preemptive optimization of a clinical antibody for broad neutralization of SARS-CoV-2 variants and robustness against viral escape.

Authors: Fangqiang Zhu Rajan, Saravanan Hayes, Conor F. et al.

Source: Science Advances. 3/28/2025, Vol. 11 Issue 13, p1-11. 11p.

Multiscale analysis for patterns of Zika virus genotype emergence, spread, and consequence.

Authors: Borucki, Monica K. Collette, Nicole M. Coffey, Lark L. et al.

Source: PLoS ONE. 12/6/2019, Vol. 14 Issue 12, p1-38. 38p.

Identification of Genome-Wide Mutations in Ciprofloxacin-Resistant F. tularensis LVS Using Whole Genome Tiling Arrays and Next Generation Sequencing.

Authors: Jaing, Crystal J. McLoughlin, Kevin S. Thissen, James B. et al.

Source: PLoS ONE. 9/26/2016, Vol. 11 Issue 9, p1-23. 23p.

Rapid Countermeasure Discovery against Francisella tularensis Based on a Metabolic Network Reconstruction

Authors: Chaudhury, Sidhartha Abdulhameed, Mohamed Diwan M. Singh, Narender et al.

Source: PLoS ONE. May2013, Vol. 8 Issue 5, p1-13. 13p.

The Role of Viral Population Diversity in Adaptation of Bovine Coronavirus to New Host Environments.

Authors: Borucki, Monica K. Allen, Jonathan E. Chen-Harris, Haiyin et al.

Source: PLoS ONE. Jan2013, Vol. 8 Issue 1, Special section p1-11. 11p.

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes.

Authors: Yelton, Alexis P. Thomas, Brian C. Simmons, Sheri L. et al.

Source: PLoS Computational Biology. Oct2011, Vol. 7 Issue 10, p1-12. 12p. 5 Diagrams, 2 Charts, 3 Graphs.