Search Results - "Zemla, Adam"

GeneSV - an Approach to Help Characterize Possible Variations in Genomic and Protein Sequences.

Authors: Zemla, Adam Kostova, Tanya Gorchakov, Rodion et al.

Source: Bioinformatics & Biology Insights. 2014, Issue 8, p1-16. 16p.

StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase.

Authors: Zemla, Adam T. Lang, Dorothy M. Kostova, Tanya et al.

Source: BMC Bioinformatics. 2011, Vol. 12 Issue 1, p226-242. 17p.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

Authors: Dongying Wu Hugenholtz, Philip Mavromatis, Konstantinos et al.

Source: Nature. 12/24/2009, Vol. 462 Issue 7276, p1056-1060. 5p. 2 Diagrams, 1 Chart, 2 Graphs.

Subjects: Genomics, Archaebacteria, Bacteria, Genomes, Phylogeny, Biological evolution, Microorganisms, Fungus-bacterium relationships, Microbiology

Differential laboratory passaging of SARS-CoV-2 viral stocks impacts the in vitro assessment of neutralizing antibodies.

Authors: Avila-Herrera, Aram Kimbrel, Jeffrey A. Manuel Martí, Jose et al.

Source: PLoS ONE. 1/25/2024, Vol. 19 Issue 1, p1-19. 19p.

On the role of the degradation rates for the dominance of the fittest in Eigen's quasispecies model.

Authors: Kostova, Tanya Zhou, Carol Zemla, Adam

Source: Journal of Biological Dynamics. Sep2011, Vol. 5 Issue 5, p531-548. 18p.

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes.

Authors: Yelton, Alexis P. Thomas, Brian C. Simmons, Sheri L. et al.

Source: PLoS Computational Biology. Oct2011, Vol. 7 Issue 10, p1-12. 12p. 5 Diagrams, 2 Charts, 3 Graphs.

Large-scale application of free energy perturbation calculations for antibody design.

Authors: Zhu, Fangqiang Bourguet, Feliza A. Bennett, William F. D. et al.

Source: Scientific Reports. 7/21/2022, Vol. 12 Issue 1, p1-14. 14p.

Identification of a Novel Drug Lead That Inhibits HCV Infection and Cell-to-Cell Transmission by Targeting the HCV E2 Glycoprotein.

Authors: Al Olaby, Reem R. Cocquerel, Laurence Zemla, Adam et al.

Source: PLoS ONE. Oct2014, Vol. 9 Issue 10, p1-20. 20p.

Multiscale analysis for patterns of Zika virus genotype emergence, spread, and consequence.

Authors: Borucki, Monica K. Collette, Nicole M. Coffey, Lark L. et al.

Source: PLoS ONE. 12/6/2019, Vol. 14 Issue 12, p1-38. 38p.

Identification of Genome-Wide Mutations in Ciprofloxacin-Resistant F. tularensis LVS Using Whole Genome Tiling Arrays and Next Generation Sequencing.

Authors: Jaing, Crystal J. McLoughlin, Kevin S. Thissen, James B. et al.

Source: PLoS ONE. 9/26/2016, Vol. 11 Issue 9, p1-23. 23p.

A strain of Yersinia pestis with a mutator phenotype from the Republic of Georgia.

Authors: Rajanna, Chythanya Ouellette, Gary Rashid, Mohammed et al.

Source: FEMS Microbiology Letters. Jun2013, Vol. 343 Issue 2, p113-120. 8p.

Rapid Countermeasure Discovery against Francisella tularensis Based on a Metabolic Network Reconstruction

Authors: Chaudhury, Sidhartha Abdulhameed, Mohamed Diwan M. Singh, Narender et al.

Source: PLoS ONE. May2013, Vol. 8 Issue 5, p1-13. 13p.

The Role of Viral Population Diversity in Adaptation of Bovine Coronavirus to New Host Environments.

Authors: Borucki, Monica K. Allen, Jonathan E. Chen-Harris, Haiyin et al.

Source: PLoS ONE. Jan2013, Vol. 8 Issue 1, Special section p1-11. 11p.

SpaK/SpaR Two-component System Characterized by a Structure-driven Domain-fusion Method and in Vitro Phosphorylation Studies.

Authors: Chakicherla, Anu Ecale Zhou, Carol L. Dang, Martha Ligon et al.

Source: PLoS Computational Biology. Jun2009, Vol. 5 Issue 6, p1-12. 12p. 2 Black and White Photographs, 3 Diagrams, 3 Charts, 1 Graph.

MannDB -- A microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Authors: Ecale Zhou, Carol L Lam, Marisa W Smith, Jason R et al.

Source: BMC Bioinformatics. 2006, Vol. 7, p1-6. 6p. 1 Color Photograph, 1 Diagram.

Mycobacterium tuberculosis RmlC epimerase (Rv3465).

Authors: Kantardjieff, Katherine A. Kim, Chang-Yub Naranjo, Cleo et al.

Source: Acta Crystallographica: Section D (Wiley-Blackwell). May2004, Vol. 60 Issue 5, p895-902. 8p.

Comparative genomics tools applied to bioterrorism defence.

Authors: Slezak, Tom Kuczmarski, Tom Ott, Linda et al.

Source: Briefings in Bioinformatics. Jun2003, Vol. 4 Issue 2, p133. 17p.

Single Amino Acid Mutations Affect Zika Virus Replication In Vitro and Virulence In Vivo.

Authors: Collette, Nicole M. Lao, Victoria H. I. Weilhammer, Dina R. et al.

Source: Viruses (1999-4915). Nov2020, Vol. 12 Issue 11, p1295. 1p.