Search Results - "Zuckerman DM"

A multiscale, Bayesian inference approach to augment mechanistic models of cell signaling with machine-learning predictions of binding affinity.

Authors: Huber, Holly A. Finley, Stacey D.

Source: PLoS Computational Biology. 6/5/2026, Vol. 22 Issue 6, p1-20. 20p.

Secretins of type-two secretion systems are necessary for exopolymeric slime secretion in cyanobacteria and myxobacteria.

Authors: Zuckerman DM So JMT Hoiczyk E

Source: Nature communications [Nat Commun] 2025 Sep 26; Vol. 16 (1), pp. 8482. Date of Electronic Publication: 2025 Sep 26.

Publication Type: Journal Article

Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE

Single-cell morphodynamical trajectories enable prediction of gene expression accompanying cell state change.

Authors: Copperman J Mclean IC Gross SM et al.

Source: Cell systems [Cell Syst] 2026 May 20; Vol. 17 (5), pp. 101567. Date of Electronic Publication: 2026 Apr 02.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101656080 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2405-4720 (Electronic) Linking ISSN: 24054712 NLM ISO Abbreviation: Cell Syst Subsets: MEDLINE

Randomized iterative trajectory reweighting for steady-state distributions without discretization error.

Authors: Kania S Webber RJ Simpson G et al.

Source: Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2026 May 12; Vol. 123 (19), pp. e2529246123. Date of Electronic Publication: 2026 May 06.

Publication Type: Journal Article

Journal Info: Publisher: National Academy of Sciences Country of Publication: United States NLM ID: 7505876 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1091-6490 (Electronic) Linking ISSN: 00278424 NLM ISO Abbreviation: Proc Natl Acad Sci U S A Subsets: MEDLINE; PubMed not MEDLINE

Walking the Tightrope: Balancing Opposing Cooperativities as an Operating Principle in Dynein Assembly.

Authors: Walker DR Otten L Idris MO et al.

Source: BioRxiv : the preprint server for biology [bioRxiv] 2026 May 04. Date of Electronic Publication: 2026 May 04.

Publication Type: Journal Article; Preprint

Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE

Multiple data set Bayesian analysis synergistically boosts ITC parameter precision.

Authors: Otten L Walker DR Barbar EJ et al.

Source: Biophysical journal [Biophys J] 2026 Mar 18. Date of Electronic Publication: 2026 Mar 18.

Publication Type: Journal Article

Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 0370626 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1542-0086 (Electronic) Linking ISSN: 00063495 NLM ISO Abbreviation: Biophys J Subsets: MEDLINE

The BPTI Story: From the Slow Exchange Core to Intrinsically Disordered Proteins.

Authors: Barbar, Elisar J.¹ (AUTHOR) elisar.barbar@oregonstate.edu

Source: International Journal of Peptide Research & Therapeutics. May2025, Vol. 31 Issue 3, p1-10. 10p.

Development of label-free cell tracking for discrimination of the heterogeneous mesenchymal migration.

Authors: Endo, Sota Yamamoto, Shotaro Miyoshi, Hiromi

Source: PLoS ONE. 3/31/2025, Vol. 20 Issue 3, p1-22. 22p.

Design of facilitated dissociation enables timing of cytokine signalling.

Authors: Broerman AJ Pollmann C Zhao Y et al.

Source: Nature [Nature] 2025 Nov; Vol. 647 (8089), pp. 528-535. Date of Electronic Publication: 2025 Sep 24.

Publication Type: Journal Article; Research Support, N.I.H., Extramural

Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE

Polymerization and flanking domains of the bactofilin BacA collectively regulate stalk formation in Asticcacaulis biprosthecum.

Authors: Jacq, Maxime Caccamo, Paul D. Brun, Yves V.

Source: PLoS Genetics. 8/13/2025, Vol. 21 Issue 8, p1-21. 21p.

Single-cell morphodynamics predict cell fate decisions during mucociliary epithelial differentiation.

Authors: Tolonen, Mari Xu, Ziwei Beker, Ozgur et al.

Source: Molecular Systems Biology. Jul2026, Vol. 22 Issue 7, p1040-1069. 30p.

Polyproline Modulates Membrane Translocation of Arginine-Rich Cell-Penetrating Peptides: Insights from Molecular Dynamics Simulations.

Authors: Choe S Mariam A Ejaz M

Source: The Journal of membrane biology [J Membr Biol] 2026 Jun 06; Vol. 259 (1). Date of Electronic Publication: 2026 Jun 06.

Publication Type: Journal Article

Journal Info: Publisher: Springer Country of Publication: United States NLM ID: 0211301 Publication Model: Electronic Cited Medium: Internet ISSN: 1432-1424 (Electronic) Linking ISSN: 00222631 NLM ISO Abbreviation: J Membr Biol Subsets: MEDLINE

Specificity and tunability of efflux pumps: A new role for the proton gradient?

Authors: Gerry, Matthew Kirby, Duncan Alexandrov, Boian S et al.

Source: PLoS Computational Biology. 1/27/2025, Vol. 21 Issue 1, p1-22. 22p.

Quantifying cooperative multisite binding in the hub protein LC8 through Bayesian inference.

Authors: Estelle AB George A Barbar EJ et al.

Source: PLoS computational biology [PLoS Comput Biol] 2023 Apr 21; Vol. 19 (4), pp. e1011059. Date of Electronic Publication: 2023 Apr 21 (Print Publication: 2023).

Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.

Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238922 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7358 (Electronic) Linking ISSN: 1553734X NLM ISO Abbreviation: PLoS Comput Biol Subsets: MEDLINE

Tracking conformational transitions of the gonadotropin hormone receptors in a bilayer of (SDPC) poly-unsaturated lipids from all-atom molecular dynamics simulations.

Authors: Jardón-Valadez, Eduardo Ulloa-Aguirre, Alfredo

Source: PLoS Computational Biology. 1/11/2024, Vol. 20 Issue 1, p1-24. 24p.

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Open collaborative writing with Manubot.

Authors: Himmelstein, Daniel S. Rubinetti, Vincent Slochower, David R. et al.

Source: PLoS Computational Biology. 6/24/2019, Vol. 15 Issue 6, p1-21. 21p. 1 Color Photograph, 1 Diagram, 2 Charts, 1 Graph.

Worldwide trends in the quality and breadth of clinical investigations of medical devices over the past decade: a scoping review and evidence map.

Authors: Keane, David F. Mathew, Cherian Longley, Ryan et al.

Source: Trials. 3/29/2025, Vol. 26 Issue 1, p1-11. 11p.

Two-photon optical Ramsey–Doppler spectroscopy of positronium and muonium.

Authors: Javary, Evans Thorpe-Woods, Edward Cortinovis, Irene et al.

Source: European Physical Journal D (EPJ D). Mar2025, Vol. 79 Issue 3, p1-12. 12p.

Role of geometry and coherent twin boundaries in mechanical response of Cu〈110〉 nanopillars under tensile loading: insights from molecular dynamics simulations.

Authors: Namakian, Reza Meng, Wen Jin Moldovan, Dorel

Source: Journal of Materials Science; May2024, Vol. 59 Issue 17, p7489-7510, 22p