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Packing Arrangements and Intersheet Interaction of Alanine Oligopeptides As Revealed by Relaxation Parameters Obtained from High-Resolution 13C Solid-State NMR.

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Title: Packing Arrangements and Intersheet Interaction of Alanine Oligopeptides As Revealed by Relaxation Parameters Obtained from High-Resolution 13C Solid-State NMR.
Authors: Akira Naito1, Yugo Tasei1, Akio Nishimura1, Tetsuo Asakura1 asakura@cc.tuat.ac.jp
Source: Journal of Physical Chemistry B. 9/28/2017, Vol. 121 Issue 38, p8946-8955. 10p.
Subjects: Oligopeptides, Alanine, Nuclear magnetic resonance, Antifreeze proteins, Amyloid
Abstract: Alanine oligopeptides provide a key structure of the crystalline domains of the silks from spiders and wild silkworm and also the sequences included in proteins such as antifreeze proteins and amyloids. In this paper, the local dynamics of alanine oligopeptides, (Ala)3, (Ala)4, and (Ala)6 were examined by high-resolution 13C solid-state NMR. The 13C spin-lattice relaxation times (T1's) for the Cβ4 carbons of antiparallel (AP)-β-sheet (Ala)4 significantly prolonged and the correlation time was estimated as 3.6 × 10-11 s which was shorter than those of other carbons in the AP-β-sheet (Ala)4 (2.8 × 10-10 s). The T1 values for the Cβ carbons of (Ala)6 showed significantly longer correlation time (8.8 × 10-9 s) than those of AP-β-sheet (Ala)4. It is thus revealed that AP-β-sheet (Ala)6 exhibited stronger intersheet interaction than those of AP-β-sheet (Ala)4. The 13C spin-spin relaxation times (T2's) for the Cβ4 carbons showed longer than those of the other Cβ1-3 carbons of AP-β-sheet (Ala)4. T2 values of Cβ carbons reflect the slow time-scale (~70 kHz) backbone motions. The C-terminal forms strong hydrogen bonds with water molecules and thus the backbone motion is slower than ~70 kHz, while the central backbone motions are faster than ~70 kHz in the AP-β-sheet (Ala)4. [ABSTRACT FROM AUTHOR]
Copyright of Journal of Physical Chemistry B is the property of American Chemical Society and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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DbLabel: Engineering Source
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  Data: Packing Arrangements and Intersheet Interaction of Alanine Oligopeptides As Revealed by Relaxation Parameters Obtained from High-Resolution <superscript>13</superscript>C Solid-State NMR.
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  Data: <searchLink fieldCode="AR" term="%22Akira+Naito%22">Akira Naito</searchLink><relatesTo>1</relatesTo><br /><searchLink fieldCode="AR" term="%22Yugo+Tasei%22">Yugo Tasei</searchLink><relatesTo>1</relatesTo><br /><searchLink fieldCode="AR" term="%22Akio+Nishimura%22">Akio Nishimura</searchLink><relatesTo>1</relatesTo><br /><searchLink fieldCode="AR" term="%22Tetsuo+Asakura%22">Tetsuo Asakura</searchLink><relatesTo>1</relatesTo><i> asakura@cc.tuat.ac.jp</i>
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  Data: <searchLink fieldCode="JN" term="%22Journal+of+Physical+Chemistry+B%22">Journal of Physical Chemistry B</searchLink>. 9/28/2017, Vol. 121 Issue 38, p8946-8955. 10p.
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  Data: <searchLink fieldCode="DE" term="%22Oligopeptides%22">Oligopeptides</searchLink><br /><searchLink fieldCode="DE" term="%22Alanine%22">Alanine</searchLink><br /><searchLink fieldCode="DE" term="%22Nuclear+magnetic+resonance%22">Nuclear magnetic resonance</searchLink><br /><searchLink fieldCode="DE" term="%22Antifreeze+proteins%22">Antifreeze proteins</searchLink><br /><searchLink fieldCode="DE" term="%22Amyloid%22">Amyloid</searchLink>
– Name: Abstract
  Label: Abstract
  Group: Ab
  Data: Alanine oligopeptides provide a key structure of the crystalline domains of the silks from spiders and wild silkworm and also the sequences included in proteins such as antifreeze proteins and amyloids. In this paper, the local dynamics of alanine oligopeptides, (Ala)3, (Ala)4, and (Ala)6 were examined by high-resolution 13C solid-state NMR. The 13C spin-lattice relaxation times (T1's) for the Cβ4 carbons of antiparallel (AP)-β-sheet (Ala)4 significantly prolonged and the correlation time was estimated as 3.6 × 10-11 s which was shorter than those of other carbons in the AP-β-sheet (Ala)4 (2.8 × 10-10 s). The T1 values for the Cβ carbons of (Ala)6 showed significantly longer correlation time (8.8 × 10-9 s) than those of AP-β-sheet (Ala)4. It is thus revealed that AP-β-sheet (Ala)6 exhibited stronger intersheet interaction than those of AP-β-sheet (Ala)4. The 13C spin-spin relaxation times (T2's) for the Cβ4 carbons showed longer than those of the other Cβ1-3 carbons of AP-β-sheet (Ala)4. T2 values of Cβ carbons reflect the slow time-scale (~70 kHz) backbone motions. The C-terminal forms strong hydrogen bonds with water molecules and thus the backbone motion is slower than ~70 kHz, while the central backbone motions are faster than ~70 kHz in the AP-β-sheet (Ala)4. [ABSTRACT FROM AUTHOR]
– Name: AbstractSuppliedCopyright
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  Data: <i>Copyright of Journal of Physical Chemistry B is the property of American Chemical Society and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
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RecordInfo BibRecord:
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      – Type: doi
        Value: 10.1021/acs.jpcb.7b07068
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      – Code: eng
        Text: English
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        PageCount: 10
        StartPage: 8946
    Subjects:
      – SubjectFull: Oligopeptides
        Type: general
      – SubjectFull: Alanine
        Type: general
      – SubjectFull: Nuclear magnetic resonance
        Type: general
      – SubjectFull: Antifreeze proteins
        Type: general
      – SubjectFull: Amyloid
        Type: general
    Titles:
      – TitleFull: Packing Arrangements and Intersheet Interaction of Alanine Oligopeptides As Revealed by Relaxation Parameters Obtained from High-Resolution 13C Solid-State NMR.
        Type: main
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          Name:
            NameFull: Akira Naito
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            NameFull: Yugo Tasei
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            NameFull: Akio Nishimura
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            NameFull: Tetsuo Asakura
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            – D: 28
              M: 09
              Text: 9/28/2017
              Type: published
              Y: 2017
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              Value: 121
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              Value: 38
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            – TitleFull: Journal of Physical Chemistry B
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