Phylogenomic analyses re‐examine the evolution of reinforcement and hypothesized hybrid speciation in Phlox wildflowers.

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Title: Phylogenomic analyses re‐examine the evolution of reinforcement and hypothesized hybrid speciation in Phlox wildflowers.
Authors: Garner, Austin G.1,2 (AUTHOR), Goulet‐Scott, Benjamin E.1,2 (AUTHOR), Hopkins, Robin1,2 (AUTHOR) rhopkins@fas.harvard.edu
Source: New Phytologist. Jul2024, Vol. 243 Issue 1, p451-465. 15p.
Subjects: Species hybridization, Plant hybridization, Plant species, Gene flow, Wild flowers, Genetic speciation
Abstract: Summary: The tree of life is riddled with reticulate evolutionary histories, and some clades, such as the eastern standing Phlox, appear to be hotspots of hybridization. In this group, there are two cases of reinforcement and nine hypothesized hybrid species. Given their historical importance in our understanding of plant speciation, the relationships between these taxa and the role of hybridization in their diversification require genomic validation.Using phylogenomic analyses, we resolve the evolutionary relationships of the eastern standing Phlox and evaluate hypotheses about whether and how hybridization and gene flow played a role in their diversification.Our results provide novel resolution of the phylogenetic relationships in this group, including paraphyly across some taxa. We identify gene flow during one case of reinforcement and find genomic support for a hybrid lineage underlying one of the five hypothesized homoploid hybrid speciation events. Additionally, we estimate the ancestries of four allotetraploid hybrid species.Our results are consistent with hybridization contributing to diverse evolutionary outcomes within this group; although, not as extensively as previously hypothesized. This study demonstrates the importance of phylogenomics in evaluating hypothesized evolutionary histories of non‐model systems and adds to the growing support of interspecific genetic exchange in the generation of biodiversity. [ABSTRACT FROM AUTHOR]
Copyright of New Phytologist is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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  Data: Phylogenomic analyses re‐examine the evolution of reinforcement and hypothesized hybrid speciation in Phlox wildflowers.
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  Data: <searchLink fieldCode="AR" term="%22Garner%2C+Austin+G%2E%22">Garner, Austin G.</searchLink><relatesTo>1,2</relatesTo> (AUTHOR)<br /><searchLink fieldCode="AR" term="%22Goulet‐Scott%2C+Benjamin+E%2E%22">Goulet‐Scott, Benjamin E.</searchLink><relatesTo>1,2</relatesTo> (AUTHOR)<br /><searchLink fieldCode="AR" term="%22Hopkins%2C+Robin%22">Hopkins, Robin</searchLink><relatesTo>1,2</relatesTo> (AUTHOR)<i> rhopkins@fas.harvard.edu</i>
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  Data: <searchLink fieldCode="JN" term="%22New+Phytologist%22">New Phytologist</searchLink>. Jul2024, Vol. 243 Issue 1, p451-465. 15p.
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  Data: <searchLink fieldCode="DE" term="%22Species+hybridization%22">Species hybridization</searchLink><br /><searchLink fieldCode="DE" term="%22Plant+hybridization%22">Plant hybridization</searchLink><br /><searchLink fieldCode="DE" term="%22Plant+species%22">Plant species</searchLink><br /><searchLink fieldCode="DE" term="%22Gene+flow%22">Gene flow</searchLink><br /><searchLink fieldCode="DE" term="%22Wild+flowers%22">Wild flowers</searchLink><br /><searchLink fieldCode="DE" term="%22Genetic+speciation%22">Genetic speciation</searchLink>
– Name: Abstract
  Label: Abstract
  Group: Ab
  Data: Summary: The tree of life is riddled with reticulate evolutionary histories, and some clades, such as the eastern standing Phlox, appear to be hotspots of hybridization. In this group, there are two cases of reinforcement and nine hypothesized hybrid species. Given their historical importance in our understanding of plant speciation, the relationships between these taxa and the role of hybridization in their diversification require genomic validation.Using phylogenomic analyses, we resolve the evolutionary relationships of the eastern standing Phlox and evaluate hypotheses about whether and how hybridization and gene flow played a role in their diversification.Our results provide novel resolution of the phylogenetic relationships in this group, including paraphyly across some taxa. We identify gene flow during one case of reinforcement and find genomic support for a hybrid lineage underlying one of the five hypothesized homoploid hybrid speciation events. Additionally, we estimate the ancestries of four allotetraploid hybrid species.Our results are consistent with hybridization contributing to diverse evolutionary outcomes within this group; although, not as extensively as previously hypothesized. This study demonstrates the importance of phylogenomics in evaluating hypothesized evolutionary histories of non‐model systems and adds to the growing support of interspecific genetic exchange in the generation of biodiversity. [ABSTRACT FROM AUTHOR]
– Name: AbstractSuppliedCopyright
  Label:
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  Data: <i>Copyright of New Phytologist is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
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      – Type: doi
        Value: 10.1111/nph.19802
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      – Code: eng
        Text: English
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        PageCount: 15
        StartPage: 451
    Subjects:
      – SubjectFull: Species hybridization
        Type: general
      – SubjectFull: Plant hybridization
        Type: general
      – SubjectFull: Plant species
        Type: general
      – SubjectFull: Gene flow
        Type: general
      – SubjectFull: Wild flowers
        Type: general
      – SubjectFull: Genetic speciation
        Type: general
    Titles:
      – TitleFull: Phylogenomic analyses re‐examine the evolution of reinforcement and hypothesized hybrid speciation in Phlox wildflowers.
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            NameFull: Garner, Austin G.
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            NameFull: Goulet‐Scott, Benjamin E.
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            NameFull: Hopkins, Robin
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            – D: 01
              M: 07
              Text: Jul2024
              Type: published
              Y: 2024
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