FoamQuant: a Python package for time‐resolved 3D image quantification of cellular materials.
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| Title: | FoamQuant: a Python package for time‐resolved 3D image quantification of cellular materials. |
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| Authors: | Schott, Florian1 (AUTHOR) florian.schott@solid.lth.se, Dollet, Benjamin2 (AUTHOR), Santucci, Stéphane3 (AUTHOR), Raufaste, Christophe4,5 (AUTHOR), Mokso, Rajmund1,6 (AUTHOR) |
| Source: | Journal of Synchrotron Radiation. Sep2025, Vol. 32 Issue 5, p1370-1377. 8p. |
| Subjects: | Computed tomography, Image processing software, Python programming language, Biomaterials, Three-dimensional imaging, Mechanical behavior of materials, Time series analysis |
| Abstract: | X‐ray tomography is a well established technique for investigating three‐dimensional bulk structures across scales, from macroscopic samples down to their microscopic constituents. The addition of a temporal dimension through dynamic, time‐resolved acquisition results in four‐dimensional datasets whose complexity often exceeds the processing capabilities of existing image analysis tools. To address the urgent need for a dedicated four‐dimensional image analysis platform for cellular materials, we present FoamQuant—a free and open‐source software package designed for batch processing and quantitative analysis of large time series of evolving cellular or foam‐like materials. FoamQuant enables the extraction of key parameters such as liquid fraction (porosity), individual bubble (pore) volume and offers advanced characterization of mechanical properties, including elastic strain and stress fields as well as individual cell rearrangements. Its user‐friendly, modular architecture is demonstrated through two case studies: (i) the orientation of plastic events in a flowing liquid foam, and (ii) bubble tracking in a coarsening albumin foam. [ABSTRACT FROM AUTHOR] |
| Copyright of Journal of Synchrotron Radiation is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.) | |
| Database: | Engineering Source |
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| Header | DbId: egs DbLabel: Engineering Source An: 187818824 AccessLevel: 6 PubType: Academic Journal PubTypeId: academicJournal PreciseRelevancyScore: 0 |
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| Items | – Name: Title Label: Title Group: Ti Data: FoamQuant: a Python package for time‐resolved 3D image quantification of cellular materials. – Name: Author Label: Authors Group: Au Data: <searchLink fieldCode="AR" term="%22Schott%2C+Florian%22">Schott, Florian</searchLink><relatesTo>1</relatesTo> (AUTHOR)<i> florian.schott@solid.lth.se</i><br /><searchLink fieldCode="AR" term="%22Dollet%2C+Benjamin%22">Dollet, Benjamin</searchLink><relatesTo>2</relatesTo> (AUTHOR)<br /><searchLink fieldCode="AR" term="%22Santucci%2C+Stéphane%22">Santucci, Stéphane</searchLink><relatesTo>3</relatesTo> (AUTHOR)<br /><searchLink fieldCode="AR" term="%22Raufaste%2C+Christophe%22">Raufaste, Christophe</searchLink><relatesTo>4,5</relatesTo> (AUTHOR)<br /><searchLink fieldCode="AR" term="%22Mokso%2C+Rajmund%22">Mokso, Rajmund</searchLink><relatesTo>1,6</relatesTo> (AUTHOR) – Name: TitleSource Label: Source Group: Src Data: <searchLink fieldCode="JN" term="%22Journal+of+Synchrotron+Radiation%22">Journal of Synchrotron Radiation</searchLink>. Sep2025, Vol. 32 Issue 5, p1370-1377. 8p. – Name: Subject Label: Subjects Group: Su Data: <searchLink fieldCode="DE" term="%22Computed+tomography%22">Computed tomography</searchLink><br /><searchLink fieldCode="DE" term="%22Image+processing+software%22">Image processing software</searchLink><br /><searchLink fieldCode="DE" term="%22Python+programming+language%22">Python programming language</searchLink><br /><searchLink fieldCode="DE" term="%22Biomaterials%22">Biomaterials</searchLink><br /><searchLink fieldCode="DE" term="%22Three-dimensional+imaging%22">Three-dimensional imaging</searchLink><br /><searchLink fieldCode="DE" term="%22Mechanical+behavior+of+materials%22">Mechanical behavior of materials</searchLink><br /><searchLink fieldCode="DE" term="%22Time+series+analysis%22">Time series analysis</searchLink> – Name: Abstract Label: Abstract Group: Ab Data: X‐ray tomography is a well established technique for investigating three‐dimensional bulk structures across scales, from macroscopic samples down to their microscopic constituents. The addition of a temporal dimension through dynamic, time‐resolved acquisition results in four‐dimensional datasets whose complexity often exceeds the processing capabilities of existing image analysis tools. To address the urgent need for a dedicated four‐dimensional image analysis platform for cellular materials, we present FoamQuant—a free and open‐source software package designed for batch processing and quantitative analysis of large time series of evolving cellular or foam‐like materials. FoamQuant enables the extraction of key parameters such as liquid fraction (porosity), individual bubble (pore) volume and offers advanced characterization of mechanical properties, including elastic strain and stress fields as well as individual cell rearrangements. Its user‐friendly, modular architecture is demonstrated through two case studies: (i) the orientation of plastic events in a flowing liquid foam, and (ii) bubble tracking in a coarsening albumin foam. [ABSTRACT FROM AUTHOR] – Name: AbstractSuppliedCopyright Label: Group: Ab Data: <i>Copyright of Journal of Synchrotron Radiation is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.) |
| PLink | https://search.ebscohost.com/login.aspx?direct=true&site=eds-live&db=egs&AN=187818824 |
| RecordInfo | BibRecord: BibEntity: Identifiers: – Type: doi Value: 10.1107/S1600577525006629 Languages: – Code: eng Text: English PhysicalDescription: Pagination: PageCount: 8 StartPage: 1370 Subjects: – SubjectFull: Computed tomography Type: general – SubjectFull: Image processing software Type: general – SubjectFull: Python programming language Type: general – SubjectFull: Biomaterials Type: general – SubjectFull: Three-dimensional imaging Type: general – SubjectFull: Mechanical behavior of materials Type: general – SubjectFull: Time series analysis Type: general Titles: – TitleFull: FoamQuant: a Python package for time‐resolved 3D image quantification of cellular materials. Type: main BibRelationships: HasContributorRelationships: – PersonEntity: Name: NameFull: Schott, Florian – PersonEntity: Name: NameFull: Dollet, Benjamin – PersonEntity: Name: NameFull: Santucci, Stéphane – PersonEntity: Name: NameFull: Raufaste, Christophe – PersonEntity: Name: NameFull: Mokso, Rajmund IsPartOfRelationships: – BibEntity: Dates: – D: 01 M: 09 Text: Sep2025 Type: published Y: 2025 Identifiers: – Type: issn-print Value: 09090495 Numbering: – Type: volume Value: 32 – Type: issue Value: 5 Titles: – TitleFull: Journal of Synchrotron Radiation Type: main |
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