Unveiling the Hidden Resistome: A Comprehensive Risk Assessment of Latent Antibiotic Resistance Genes in China's Wastewater.

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Title: Unveiling the Hidden Resistome: A Comprehensive Risk Assessment of Latent Antibiotic Resistance Genes in China's Wastewater.
Authors: Yang, Wenshan1 (AUTHOR) yangwenshan@nwafu.edu.cn, Guo, Jiaming1 (AUTHOR)
Source: Environmental Microbiology. May2026, Vol. 28 Issue 5, p1-14. 14p.
Subjects: Drug resistance in bacteria, Sewage, Risk assessment, Horizontal gene transfer, Mobile genetic elements, Metagenomics, Ecosystems
Geographic Terms: China
Abstract: Wastewater systems are important reservoirs of antibiotic resistance genes (ARGs), but the ecological and health risks of numerous latent ARGs (LARGs) remain unclear. In this study, we analysed 636 wastewater metagenomic samples from China and constructed a database containing 1587 LARGs. Across all environments, LARGs encoding serine‐β‐lactamases were the most abundant and prevalent. A comprehensive risk assessment, integrating host pathogenicity, gene mobility and environmental prevalence, was performed on 561 LARGs identified in metagenome‐assembled genomes. Most LARGs exhibited low levels across all three dimensions, suggesting limited transmission risk. Nevertheless, 37 high‐risk LARGs were identified, indicating non‐negligible threats. Functional validation showed that the top three extremely high‐risk LARGs significantly enhanced host resistance to ampicillin and ciprofloxacin when expressed in Escherichia coli, while AlphaFold3 revealed typical resistance protein folding, further supporting their functional activity. Horizontal gene transfer analysis indicated that these high‐risk genes have disseminated from wastewater to natural water bodies such as rivers via plasmid‐mediated mechanisms. Collectively, wastewater acts not only as an 'accumulation pool' for LARGs but also as a potential source releasing 'super‐risky' resistance gene into the environment. Therefore, urgent efforts are needed to monitor and control these high‐risk LARGs and their mobile genetic elements to block their environmental spread. [ABSTRACT FROM AUTHOR]
Copyright of Environmental Microbiology is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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  Label: Title
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  Data: Unveiling the Hidden Resistome: A Comprehensive Risk Assessment of Latent Antibiotic Resistance Genes in China's Wastewater.
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  Data: <searchLink fieldCode="AR" term="%22Yang%2C+Wenshan%22">Yang, Wenshan</searchLink><relatesTo>1</relatesTo> (AUTHOR)<i> yangwenshan@nwafu.edu.cn</i><br /><searchLink fieldCode="AR" term="%22Guo%2C+Jiaming%22">Guo, Jiaming</searchLink><relatesTo>1</relatesTo> (AUTHOR)
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  Data: <searchLink fieldCode="DE" term="%22Drug+resistance+in+bacteria%22">Drug resistance in bacteria</searchLink><br /><searchLink fieldCode="DE" term="%22Sewage%22">Sewage</searchLink><br /><searchLink fieldCode="DE" term="%22Risk+assessment%22">Risk assessment</searchLink><br /><searchLink fieldCode="DE" term="%22Horizontal+gene+transfer%22">Horizontal gene transfer</searchLink><br /><searchLink fieldCode="DE" term="%22Mobile+genetic+elements%22">Mobile genetic elements</searchLink><br /><searchLink fieldCode="DE" term="%22Metagenomics%22">Metagenomics</searchLink><br /><searchLink fieldCode="DE" term="%22Ecosystems%22">Ecosystems</searchLink>
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  Data: <searchLink fieldCode="DE" term="%22China%22">China</searchLink>
– Name: Abstract
  Label: Abstract
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  Data: Wastewater systems are important reservoirs of antibiotic resistance genes (ARGs), but the ecological and health risks of numerous latent ARGs (LARGs) remain unclear. In this study, we analysed 636 wastewater metagenomic samples from China and constructed a database containing 1587 LARGs. Across all environments, LARGs encoding serine‐β‐lactamases were the most abundant and prevalent. A comprehensive risk assessment, integrating host pathogenicity, gene mobility and environmental prevalence, was performed on 561 LARGs identified in metagenome‐assembled genomes. Most LARGs exhibited low levels across all three dimensions, suggesting limited transmission risk. Nevertheless, 37 high‐risk LARGs were identified, indicating non‐negligible threats. Functional validation showed that the top three extremely high‐risk LARGs significantly enhanced host resistance to ampicillin and ciprofloxacin when expressed in Escherichia coli, while AlphaFold3 revealed typical resistance protein folding, further supporting their functional activity. Horizontal gene transfer analysis indicated that these high‐risk genes have disseminated from wastewater to natural water bodies such as rivers via plasmid‐mediated mechanisms. Collectively, wastewater acts not only as an 'accumulation pool' for LARGs but also as a potential source releasing 'super‐risky' resistance gene into the environment. Therefore, urgent efforts are needed to monitor and control these high‐risk LARGs and their mobile genetic elements to block their environmental spread. [ABSTRACT FROM AUTHOR]
– Name: AbstractSuppliedCopyright
  Label:
  Group: Ab
  Data: <i>Copyright of Environmental Microbiology is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites without the copyright holder's express written permission. Additionally, content may not be used with any artificial intelligence tools or machine learning technologies. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract.</i> (Copyright applies to all Abstracts.)
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RecordInfo BibRecord:
  BibEntity:
    Identifiers:
      – Type: doi
        Value: 10.1111/1462-2920.70330
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      – Code: eng
        Text: English
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      Pagination:
        PageCount: 14
        StartPage: 1
    Subjects:
      – SubjectFull: Drug resistance in bacteria
        Type: general
      – SubjectFull: Sewage
        Type: general
      – SubjectFull: Risk assessment
        Type: general
      – SubjectFull: Horizontal gene transfer
        Type: general
      – SubjectFull: Mobile genetic elements
        Type: general
      – SubjectFull: Metagenomics
        Type: general
      – SubjectFull: Ecosystems
        Type: general
      – SubjectFull: China
        Type: general
    Titles:
      – TitleFull: Unveiling the Hidden Resistome: A Comprehensive Risk Assessment of Latent Antibiotic Resistance Genes in China's Wastewater.
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      – PersonEntity:
          Name:
            NameFull: Yang, Wenshan
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          Name:
            NameFull: Guo, Jiaming
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          Dates:
            – D: 01
              M: 05
              Text: May2026
              Type: published
              Y: 2026
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              Value: 28
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              Value: 5
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            – TitleFull: Environmental Microbiology
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