No Electron Left Behind: A Rule-Based Expert System To Predict Chemical Reactions and Reaction Mechanisms.

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Bibliographic Details
Title: No Electron Left Behind: A Rule-Based Expert System To Predict Chemical Reactions and Reaction Mechanisms.
Authors: Jonathan H. Chen1, Pierre Baldi1
Source: Journal of Chemical Information & Modeling. Sep2009, Vol. 49 Issue 9, p2034-2043. 10p.
Subjects: Chemical reactions, Organic reaction mechanisms, Electrons, Computer assisted research, Drug design, Drug development
Abstract: Predicting the course and major products of arbitrary reactions is a fundamental problem in chemistry, one that chemists must address in a variety of tasks ranging from synthesis design to reaction discovery. Described here is an expert system to predict organic chemical reactions based on a knowledge base of over 1500 manually composed reaction transformation rules. Novel rule extensions are introduced to enable robust predictions and describe detailed reaction mechanisms at the level of electron flows in elementary reaction steps, ensuring that all reactions are properly balanced and atom-mapped. The core reaction prediction functionalities of this expert system are illustrated with applications including: (1) prediction of detailed reaction mechanisms; (2) computer-based learning in organic chemistry; (3) retrosynthetic analysis; and (4) combinatorial library design. Select applications are available via http://cdb.ics.uci.edu. [ABSTRACT FROM AUTHOR]
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Database: Engineering Source
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