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Abstractions for Genomics.

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Title: Abstractions for Genomics.
Authors: Bafna, Vineet1 (AUTHOR) vbafna@cs.ucsd.edu, Deutsch, Alin2 (AUTHOR) abdeutsch@ucsd.edu, Heiberg, Andrew3 (AUTHOR) aheiberg@eng.ucsd.edu, Kozanitis, Christos4 (AUTHOR) ckozanit@eng.ucsd.edu, Ohno-Machado, Lucila5,6 (AUTHOR) machado@ucsd.edu, Varghese, George7 (AUTHOR) gvarghese@ucsd.edu
Source: Communications of the ACM. Jan2013, Vol. 56 Issue 1, p83-93. 11p. 1 Color Photograph, 2 Diagrams, 2 Graphs.
Subjects: Genomics, Electronic data processing software, Information storage & retrieval systems, Computer programming, Computer software development, Computer science, Computer software
Abstract: The article discusses the development of genomic databases with interactive access for the storage of information on human DNA which requires layered abstractions in genome data processing. Topics include the three layers for genome processing called the instrument layer, the evidence layer, and the inference layer; the GQL declarative query computer language for automatic optimization and privacy checks; and information on the data management and storage aspects of DNA genomics sequencing and processing.
Database: Engineering Source
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DbLabel: Engineering Source
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PubType: Periodical
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  Data: Abstractions for Genomics.
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  Data: <searchLink fieldCode="AR" term="%22Bafna%2C+Vineet%22">Bafna, Vineet</searchLink><relatesTo>1</relatesTo> (AUTHOR)<i> vbafna@cs.ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Deutsch%2C+Alin%22">Deutsch, Alin</searchLink><relatesTo>2</relatesTo> (AUTHOR)<i> abdeutsch@ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Heiberg%2C+Andrew%22">Heiberg, Andrew</searchLink><relatesTo>3</relatesTo> (AUTHOR)<i> aheiberg@eng.ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Kozanitis%2C+Christos%22">Kozanitis, Christos</searchLink><relatesTo>4</relatesTo> (AUTHOR)<i> ckozanit@eng.ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Ohno-Machado%2C+Lucila%22">Ohno-Machado, Lucila</searchLink><relatesTo>5,6</relatesTo> (AUTHOR)<i> machado@ucsd.edu</i><br /><searchLink fieldCode="AR" term="%22Varghese%2C+George%22">Varghese, George</searchLink><relatesTo>7</relatesTo> (AUTHOR)<i> gvarghese@ucsd.edu</i>
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  Data: <searchLink fieldCode="JN" term="%22Communications+of+the+ACM%22">Communications of the ACM</searchLink>. Jan2013, Vol. 56 Issue 1, p83-93. 11p. 1 Color Photograph, 2 Diagrams, 2 Graphs.
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  Data: <searchLink fieldCode="DE" term="%22Genomics%22">Genomics</searchLink><br /><searchLink fieldCode="DE" term="%22Electronic+data+processing+software%22">Electronic data processing software</searchLink><br /><searchLink fieldCode="DE" term="%22Information+storage+%26+retrieval+systems%22">Information storage & retrieval systems</searchLink><br /><searchLink fieldCode="DE" term="%22Computer+programming%22">Computer programming</searchLink><br /><searchLink fieldCode="DE" term="%22Computer+software+development%22">Computer software development</searchLink><br /><searchLink fieldCode="DE" term="%22Computer+science%22">Computer science</searchLink><br /><searchLink fieldCode="DE" term="%22Computer+software%22">Computer software</searchLink>
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  Data: The article discusses the development of genomic databases with interactive access for the storage of information on human DNA which requires layered abstractions in genome data processing. Topics include the three layers for genome processing called the instrument layer, the evidence layer, and the inference layer; the GQL declarative query computer language for automatic optimization and privacy checks; and information on the data management and storage aspects of DNA genomics sequencing and processing.
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        Value: 10.1145/2398356.2398376
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        Text: English
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              Text: Jan2013
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