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Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies.

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Title: Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies.
Authors: Waterhouse RM; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland. robert.waterhouse@unil.ch., Aganezov S; Department of Computer Science, Princeton University, Princeton, NJ, 08450, USA.; Department of Computer Science, Johns Hopkins University, Baltimore, MD, 21218, USA., Anselmetti Y; ISEM, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France., Lee J; The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA., Ruzzante L; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland., Reijnders MJMF; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland., Feron R; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland., Bérard S; ISEM, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France., George P; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA., Hahn MW; Departments of Biology and Computer Science, Indiana University, Bloomington, IN, 47405, USA., Howell PI; Centers for Disease Control and Prevention, Atlanta, GA, 30329, USA., Kamali M; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.; Department of Medical Entomology and Parasitology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA., Lawson D; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, UK., Maslen G; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, UK., Peery A; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA., Sharakhova MV; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.; Laboratory of Ecology, Genetics and Environmental Protection, Tomsk State University, Tomsk, Russia, 634050., Tannier E; Laboratoire de Biométrie et Biologie Evolutive, Université Lyon 1, Unité Mixte de Recherche 5558 Centre National de la Recherche Scientifique, 69622, Villeurbanne, France.; Institut national de recherche en informatique et en automatique, Montbonnot, 38334, Grenoble, Rhône-Alpes, France., Unger MF; Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN, 46556, USA., Zhang SV; Departments of Biology and Computer Science, Indiana University, Bloomington, IN, 47405, USA., Alekseyev MA; Department of Mathematics and Computational Biology Institute, George Washington University, Ashburn, VA, 20147, USA., Besansky NJ; Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN, 46556, USA., Chauve C; Department of Mathematics, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada., Emrich SJ; Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN, 37996, USA., Sharakhov IV; The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA. igor@vt.edu.; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA. igor@vt.edu.; Laboratory of Ecology, Genetics and Environmental Protection, Tomsk State University, Tomsk, Russia, 634050. igor@vt.edu.
Source: BMC biology [BMC Biol] 2020 Jan 02; Vol. 18 (1), pp. 1. Date of Electronic Publication: 2020 Jan 02.
Publication Type: Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101190720 Publication Model: Electronic Cited Medium: Internet ISSN: 1741-7007 (Electronic) Linking ISSN: 17417007 NLM ISO Abbreviation: BMC Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies.
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  Data: <searchLink fieldCode="AU" term="%22Waterhouse+RM%22">Waterhouse RM</searchLink>; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland. robert.waterhouse@unil.ch.<br /><searchLink fieldCode="AU" term="%22Aganezov+S%22">Aganezov S</searchLink>; Department of Computer Science, Princeton University, Princeton, NJ, 08450, USA.; Department of Computer Science, Johns Hopkins University, Baltimore, MD, 21218, USA.<br /><searchLink fieldCode="AU" term="%22Anselmetti+Y%22">Anselmetti Y</searchLink>; ISEM, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France.<br /><searchLink fieldCode="AU" term="%22Lee+J%22">Lee J</searchLink>; The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.<br /><searchLink fieldCode="AU" term="%22Ruzzante+L%22">Ruzzante L</searchLink>; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.<br /><searchLink fieldCode="AU" term="%22Reijnders+MJMF%22">Reijnders MJMF</searchLink>; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.<br /><searchLink fieldCode="AU" term="%22Feron+R%22">Feron R</searchLink>; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland.<br /><searchLink fieldCode="AU" term="%22Bérard+S%22">Bérard S</searchLink>; ISEM, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France.<br /><searchLink fieldCode="AU" term="%22George+P%22">George P</searchLink>; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.<br /><searchLink fieldCode="AU" term="%22Hahn+MW%22">Hahn MW</searchLink>; Departments of Biology and Computer Science, Indiana University, Bloomington, IN, 47405, USA.<br /><searchLink fieldCode="AU" term="%22Howell+PI%22">Howell PI</searchLink>; Centers for Disease Control and Prevention, Atlanta, GA, 30329, USA.<br /><searchLink fieldCode="AU" term="%22Kamali+M%22">Kamali M</searchLink>; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.; Department of Medical Entomology and Parasitology, Faculty of Medical Sciences, Tarbiat Modares University, Tehran, Iran.<br /><searchLink fieldCode="AU" term="%22Koren+S%22">Koren S</searchLink>; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA.<br /><searchLink fieldCode="AU" term="%22Lawson+D%22">Lawson D</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Maslen+G%22">Maslen G</searchLink>; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.<br /><searchLink fieldCode="AU" term="%22Peery+A%22">Peery A</searchLink>; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.<br /><searchLink fieldCode="AU" term="%22Phillippy+AM%22">Phillippy AM</searchLink>; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD, 20892, USA.<br /><searchLink fieldCode="AU" term="%22Sharakhova+MV%22">Sharakhova MV</searchLink>; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA.; Laboratory of Ecology, Genetics and Environmental Protection, Tomsk State University, Tomsk, Russia, 634050.<br /><searchLink fieldCode="AU" term="%22Tannier+E%22">Tannier E</searchLink>; Laboratoire de Biométrie et Biologie Evolutive, Université Lyon 1, Unité Mixte de Recherche 5558 Centre National de la Recherche Scientifique, 69622, Villeurbanne, France.; Institut national de recherche en informatique et en automatique, Montbonnot, 38334, Grenoble, Rhône-Alpes, France.<br /><searchLink fieldCode="AU" term="%22Unger+MF%22">Unger MF</searchLink>; Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN, 46556, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+SV%22">Zhang SV</searchLink>; Departments of Biology and Computer Science, Indiana University, Bloomington, IN, 47405, USA.<br /><searchLink fieldCode="AU" term="%22Alekseyev+MA%22">Alekseyev MA</searchLink>; Department of Mathematics and Computational Biology Institute, George Washington University, Ashburn, VA, 20147, USA.<br /><searchLink fieldCode="AU" term="%22Besansky+NJ%22">Besansky NJ</searchLink>; Eck Institute for Global Health and Department of Biological Sciences, University of Notre Dame, Galvin Life Sciences Building, Notre Dame, IN, 46556, USA.<br /><searchLink fieldCode="AU" term="%22Chauve+C%22">Chauve C</searchLink>; Department of Mathematics, Simon Fraser University, Burnaby, British Columbia, V5A 1S6, Canada.<br /><searchLink fieldCode="AU" term="%22Emrich+SJ%22">Emrich SJ</searchLink>; Department of Electrical Engineering and Computer Science, University of Tennessee, Knoxville, TN, 37996, USA.<br /><searchLink fieldCode="AU" term="%22Sharakhov+IV%22">Sharakhov IV</searchLink>; The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA. igor@vt.edu.; Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA. igor@vt.edu.; Laboratory of Ecology, Genetics and Environmental Protection, Tomsk State University, Tomsk, Russia, 634050. igor@vt.edu.
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  Data: <searchLink fieldCode="JN" term="%22101190720%22">BMC biology</searchLink> [BMC Biol] 2020 Jan 02; Vol. 18 (1), pp. 1. <i>Date of Electronic Publication: </i>2020 Jan 02.
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