Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing.
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| Title: | Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing. |
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| Authors: | Lee ER; National HIV and Retrovirology Laboratories, National Microbiology Laboratory at JC Wilt Infectious Diseases Research Centre, Public Health Agency of Canada, Winnipeg, Manitoba, Canada., Parkin N; Data First Consulting Inc., Belmont, California, USA., Jennings C; Virology Quality Assurance Program, Rush Medical College, Chicago, USA., Brumme CJ; British Columbia Center for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada.; Division of Infectious Diseases, Faculty of Medicine, University of British Columbia, Vancouver, British Columbia, Canada., Enns E; Bioinformatics Core at the National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada., Casadellà M; IrsiCaixa AIDS Research Institute, Badalona, Catalonia, Spain., Howison M; Research Improving People's Lives, Providence, Rhode Island, USA., Coetzer M; Division of Infectious Diseases, Brown University Alpert Medical School, Providence, Rhode Island, USA., Avila-Rios S; Centre for Research in Infectious Diseases, National Institute of Respiratory Diseases, Mexico City, Mexico., Capina R; National HIV and Retrovirology Laboratories, National Microbiology Laboratory at JC Wilt Infectious Diseases Research Centre, Public Health Agency of Canada, Winnipeg, Manitoba, Canada., Marinier E; Bioinformatics Core at the National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada., Van Domselaar G; Bioinformatics Core at the National Microbiology Laboratory, Public Health Agency of Canada, Winnipeg, Manitoba, Canada.; Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada., Noguera-Julian M; IrsiCaixa AIDS Research Institute, Badalona, Catalonia, Spain., Kirkby D; British Columbia Center for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada.; Division of Infectious Diseases, Faculty of Medicine, University of British Columbia, Vancouver, British Columbia, Canada., Knaggs J; British Columbia Center for Excellence in HIV/AIDS, Vancouver, British Columbia, Canada.; Division of Infectious Diseases, Faculty of Medicine, University of British Columbia, Vancouver, British Columbia, Canada., Harrigan R; Division of AIDS, Department of Medicine, University of British Columbia, Vancouver, Canada., Quiñones-Mateu M; Department of Microbiology and Immunology, University of Otago, Dunedin, New Zealand., Paredes R; IrsiCaixa AIDS Research Institute, Badalona, Catalonia, Spain.; Infectious Diseases Service, Hospital Germans Trias, Badalona, Catalonia, Spain., Kantor R; Division of Infectious Diseases, Brown University Alpert Medical School, Providence, Rhode Island, USA., Sandstrom P; National HIV and Retrovirology Laboratories, National Microbiology Laboratory at JC Wilt Infectious Diseases Research Centre, Public Health Agency of Canada, Winnipeg, Manitoba, Canada.; Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada., Ji H; National HIV and Retrovirology Laboratories, National Microbiology Laboratory at JC Wilt Infectious Diseases Research Centre, Public Health Agency of Canada, Winnipeg, Manitoba, Canada. hezhao.ji@canada.ca.; Department of Medical Microbiology and Infectious Diseases, University of Manitoba, Winnipeg, Manitoba, Canada. hezhao.ji@canada.ca. |
| Source: | Scientific reports [Sci Rep] 2020 Jan 31; Vol. 10 (1), pp. 1634. Date of Electronic Publication: 2020 Jan 31. |
| Publication Type: | Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't |
| Journal Info: | Publisher: Nature Publishing Group Country of Publication: England NLM ID: 101563288 Publication Model: Electronic Cited Medium: Internet ISSN: 2045-2322 (Electronic) Linking ISSN: 20452322 NLM ISO Abbreviation: Sci Rep Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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| ISSN: | 2045-2322 |
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| DOI: | 10.1038/s41598-020-58544-z |
