Effect of sequence depth and length in long-read assembly of the maize inbred NC358.
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| Title: | Effect of sequence depth and length in long-read assembly of the maize inbred NC358. |
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| Authors: | Ou S; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Liu J; Department of Genetics, University of Georgia, Athens, Georgia, 30602, USA., Chougule KM; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA., Fungtammasan A; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA., Seetharam AS; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA.; Genome Informatics Facility, Iowa State University, Ames, Iowa, 50011, USA., Stein JC; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA., Llaca V; Genomics Technologies, Applied Science and Technology, Corteva Agriscience TM, Johnston, Iowa, 50131, USA., Manchanda N; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Gilbert AM; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, 55108, USA., Wei S; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA., Chin CS; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA., Hufnagel DE; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Pedersen S; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Snodgrass SJ; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA., Fengler K; Genomics Technologies, Applied Science and Technology, Corteva Agriscience TM, Johnston, Iowa, 50131, USA., Woodhouse M; USDA ARS Corn Insects and Crop Genetics Research Unit, Ames, Iowa, 50011, USA., Walenz BP; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA., Phillippy AM; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, 20892, USA., Hannigan BT; DNAnexus, Inc., Mountain View, San Francisco, California, 94040, USA., Dawe RK; Department of Genetics, University of Georgia, Athens, Georgia, 30602, USA. kdawe@uga.edu., Hirsch CN; Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, Minnesota, 55108, USA. cnhirsch@umn.edu., Hufford MB; Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA. mhufford@iastate.edu., Ware D; Cold Spring Harbor Laboratory, Cold Spring Harbor, New York, 11724, USA. ware@cshl.edu.; USDA ARS Robert W. Holley Center for Agriculture and Health, Agricultural Research Service, Ithaca, New York, 14853, USA. ware@cshl.edu. |
| Source: | Nature communications [Nat Commun] 2020 May 08; Vol. 11 (1), pp. 2288. Date of Electronic Publication: 2020 May 08. |
| Publication Type: | Journal Article; Research Support, N.I.H., Intramural; Research Support, U.S. Gov't, Non-P.H.S. |
| Journal Info: | Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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