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Cross-species analysis of enhancer logic using deep learning.

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Title: Cross-species analysis of enhancer logic using deep learning.
Authors: Minnoye L; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium., Taskiran II; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium., Mauduit D; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium., Fazio M; Howard Hughes Medical Institute, Stem Cell Program and the Division of Pediatric Hematology/Oncology, Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02115, USA.; Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Cambridge, Massachusetts 02138, USA., Van Aerschot L; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.; Laboratory for Disease Mechanisms in Cancer, KU Leuven, 3000 Leuven, Belgium., Hulselmans G; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium., Christiaens V; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium., Makhzami S; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium., Seltenhammer M; Center for Forensic Medicine, Medical University of Vienna, 1090 Vienna, Austria.; Division of Livestock Sciences (NUWI) - BOKU University of Natural Resources and Life Sciences, 1180 Vienna, Austria., Karras P; VIB-KU Leuven Center for Cancer Biology, 3000 Leuven, Belgium.; KU Leuven, Department of Oncology KU Leuven, 3000 Leuven, Belgium., Primot A; CNRS-University of Rennes 1, UMR6290, Institute of Genetics and Development of Rennes, Faculty of Medicine, 35000 Rennes, France., Cadieu E; CNRS-University of Rennes 1, UMR6290, Institute of Genetics and Development of Rennes, Faculty of Medicine, 35000 Rennes, France., van Rooijen E; Howard Hughes Medical Institute, Stem Cell Program and the Division of Pediatric Hematology/Oncology, Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02115, USA.; Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Cambridge, Massachusetts 02138, USA., Marine JC; VIB-KU Leuven Center for Cancer Biology, 3000 Leuven, Belgium.; KU Leuven, Department of Oncology KU Leuven, 3000 Leuven, Belgium., Egidy G; Université Paris-Saclay, INRA, AgroParisTech, GABI, 78350 Jouy-en-Josas, France., Ghanem GE; Institut Jules Bordet, Université Libre de Bruxelles, 1000 Brussels, Belgium., Zon L; Howard Hughes Medical Institute, Stem Cell Program and the Division of Pediatric Hematology/Oncology, Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02115, USA.; Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Cambridge, Massachusetts 02138, USA., Wouters J; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium., Aerts S; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.
Source: Genome research [Genome Res] 2020 Dec; Vol. 30 (12), pp. 1815-1834. Date of Electronic Publication: 2020 Jul 30.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Cold Spring Harbor Laboratory Press Country of Publication: United States NLM ID: 9518021 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1549-5469 (Electronic) Linking ISSN: 10889051 NLM ISO Abbreviation: Genome Res Subsets: MEDLINE
Database: MEDLINE Ultimate
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PubType: Academic Journal
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  Data: Cross-species analysis of enhancer logic using deep learning.
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  Data: <searchLink fieldCode="AU" term="%22Minnoye+L%22">Minnoye L</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Taskiran+II%22">Taskiran II</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Mauduit+D%22">Mauduit D</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Fazio+M%22">Fazio M</searchLink>; Howard Hughes Medical Institute, Stem Cell Program and the Division of Pediatric Hematology/Oncology, Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02115, USA.; Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Cambridge, Massachusetts 02138, USA.<br /><searchLink fieldCode="AU" term="%22Van+Aerschot+L%22">Van Aerschot L</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.; Laboratory for Disease Mechanisms in Cancer, KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Hulselmans+G%22">Hulselmans G</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Christiaens+V%22">Christiaens V</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Makhzami+S%22">Makhzami S</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Seltenhammer+M%22">Seltenhammer M</searchLink>; Center for Forensic Medicine, Medical University of Vienna, 1090 Vienna, Austria.; Division of Livestock Sciences (NUWI) - BOKU University of Natural Resources and Life Sciences, 1180 Vienna, Austria.<br /><searchLink fieldCode="AU" term="%22Karras+P%22">Karras P</searchLink>; VIB-KU Leuven Center for Cancer Biology, 3000 Leuven, Belgium.; KU Leuven, Department of Oncology KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Primot+A%22">Primot A</searchLink>; CNRS-University of Rennes 1, UMR6290, Institute of Genetics and Development of Rennes, Faculty of Medicine, 35000 Rennes, France.<br /><searchLink fieldCode="AU" term="%22Cadieu+E%22">Cadieu E</searchLink>; CNRS-University of Rennes 1, UMR6290, Institute of Genetics and Development of Rennes, Faculty of Medicine, 35000 Rennes, France.<br /><searchLink fieldCode="AU" term="%22van+Rooijen+E%22">van Rooijen E</searchLink>; Howard Hughes Medical Institute, Stem Cell Program and the Division of Pediatric Hematology/Oncology, Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02115, USA.; Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Cambridge, Massachusetts 02138, USA.<br /><searchLink fieldCode="AU" term="%22Marine+JC%22">Marine JC</searchLink>; VIB-KU Leuven Center for Cancer Biology, 3000 Leuven, Belgium.; KU Leuven, Department of Oncology KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Egidy+G%22">Egidy G</searchLink>; Université Paris-Saclay, INRA, AgroParisTech, GABI, 78350 Jouy-en-Josas, France.<br /><searchLink fieldCode="AU" term="%22Ghanem+GE%22">Ghanem GE</searchLink>; Institut Jules Bordet, Université Libre de Bruxelles, 1000 Brussels, Belgium.<br /><searchLink fieldCode="AU" term="%22Zon+L%22">Zon L</searchLink>; Howard Hughes Medical Institute, Stem Cell Program and the Division of Pediatric Hematology/Oncology, Boston Children's Hospital and Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts 02115, USA.; Department of Stem Cell and Regenerative Biology, Harvard Stem Cell Institute, Cambridge, Massachusetts 02138, USA.<br /><searchLink fieldCode="AU" term="%22Wouters+J%22">Wouters J</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.<br /><searchLink fieldCode="AU" term="%22Aerts+S%22">Aerts S</searchLink>; VIB-KU Leuven Center for Brain and Disease Research, 3000 Leuven, Belgium.; KU Leuven, Department of Human Genetics KU Leuven, 3000 Leuven, Belgium.
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  Data: <searchLink fieldCode="JN" term="%229518021%22">Genome research</searchLink> [Genome Res] 2020 Dec; Vol. 30 (12), pp. 1815-1834. <i>Date of Electronic Publication: </i>2020 Jul 30.
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  Data: <i>Publisher: </i><searchLink fieldCode="PB" term="%22Cold+Spring+Harbor+Laboratory+Press%22">Cold Spring Harbor Laboratory Press </searchLink><i>Country of Publication: </i>United States <i>NLM ID: </i>9518021 <i>Publication Model: </i>Print-Electronic <i>Cited Medium: </i>Internet <i>ISSN: </i>1549-5469 (Electronic) <i>Linking ISSN: </i><searchLink fieldCode="IS" term="%2210889051%22">10889051 </searchLink><i>NLM ISO Abbreviation: </i>Genome Res <i>Subsets: </i>MEDLINE
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