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Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery.

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Title: Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery.
Authors: Chiou SH; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA., Tseng D; Department of Medicine, Division of Oncology, Stanford University, Stanford, CA 94305, USA., Reuben A; Department of Thoracic Head and Neck Medical Oncology, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA., Mallajosyula V; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA., Molina IS; Rutgers Cancer Institute of New Jersey, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA., Conley S; Institute for Stem Cell Biology and Regenerative Medicine Institute, Stanford University, Stanford, CA 94305, USA., Wilhelmy J; Stanford Genome Technology Center, Stanford University, Stanford, CA 94305, USA., McSween AM; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA., Yang X; Department of Molecular and Cellular Physiology and Structural Biology, Stanford University, Stanford, CA 94305, USA., Nishimiya D; Department of Molecular and Cellular Physiology and Structural Biology, Stanford University, Stanford, CA 94305, USA., Sinha R; Institute for Stem Cell Biology and Regenerative Medicine Institute, Stanford University, Stanford, CA 94305, USA., Nabet BY; Department of Radiation Oncology, Stanford University, Stanford, CA 94305, USA., Wang C; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA., Shrager JB; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA., Berry MF; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA., Backhus L; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA., Lui NS; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA., Wakelee HA; Department of Medicine, Division of Oncology, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA., Neal JW; Department of Medicine, Division of Oncology, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA., Padda SK; Department of Medicine, Division of Oncology, Stanford University, Stanford, CA 94305, USA., Berry GJ; Department of Pathology, Stanford University, Stanford, CA 94305, USA., Delaidelli A; Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, BC V5Z 1L3, Canada., Sorensen PH; Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, BC V5Z 1L3, Canada., Sotillo E; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA., Tran P; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA., Benson JA; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA., Richards R; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA; Department of Pediatrics, Stanford University, Stanford, CA 94305, USA., Labanieh L; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA., Klysz DD; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA., Louis DM; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA., Feldman SA; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA., Diehn M; Institute for Stem Cell Biology and Regenerative Medicine Institute, Stanford University, Stanford, CA 94305, USA; Department of Radiation Oncology, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA., Weissman IL; Institute for Stem Cell Biology and Regenerative Medicine Institute, Stanford University, Stanford, CA 94305, USA., Zhang J; Department of Thoracic Head and Neck Medical Oncology, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA; Department of Genomic Medicine, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA., Wistuba II; Department of Translational Molecular Pathology, Division of Pathology and Laboratory Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA., Futreal PA; Department of Genomic Medicine, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA., Heymach JV; Department of Thoracic Head and Neck Medical Oncology, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA., Garcia KC; Department of Molecular and Cellular Physiology and Structural Biology, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305, USA., Mackall CL; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA; Department of Pediatrics, Stanford University, Stanford, CA 94305, USA; Department of Medicine, Stanford University, Stanford, CA 94305, USA., Davis MM; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA. Electronic address: mmdavis@stanford.edu.
Source: Immunity [Immunity] 2021 Mar 09; Vol. 54 (3), pp. 586-602.e8.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 9432918 Publication Model: Print Cited Medium: Internet ISSN: 1097-4180 (Electronic) Linking ISSN: 10747613 NLM ISO Abbreviation: Immunity Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Global analysis of shared T cell specificities in human non-small cell lung cancer enables HLA inference and antigen discovery.
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  Data: <searchLink fieldCode="AU" term="%22Chiou+SH%22">Chiou SH</searchLink>; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Tseng+D%22">Tseng D</searchLink>; Department of Medicine, Division of Oncology, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Reuben+A%22">Reuben A</searchLink>; Department of Thoracic Head and Neck Medical Oncology, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA.<br /><searchLink fieldCode="AU" term="%22Mallajosyula+V%22">Mallajosyula V</searchLink>; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Molina+IS%22">Molina IS</searchLink>; Rutgers Cancer Institute of New Jersey, Robert Wood Johnson Medical School, Rutgers, The State University of New Jersey, New Brunswick, NJ 08901, USA.<br /><searchLink fieldCode="AU" term="%22Conley+S%22">Conley S</searchLink>; Institute for Stem Cell Biology and Regenerative Medicine Institute, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Wilhelmy+J%22">Wilhelmy J</searchLink>; Stanford Genome Technology Center, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22McSween+AM%22">McSween AM</searchLink>; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Yang+X%22">Yang X</searchLink>; Department of Molecular and Cellular Physiology and Structural Biology, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Nishimiya+D%22">Nishimiya D</searchLink>; Department of Molecular and Cellular Physiology and Structural Biology, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Sinha+R%22">Sinha R</searchLink>; Institute for Stem Cell Biology and Regenerative Medicine Institute, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Nabet+BY%22">Nabet BY</searchLink>; Department of Radiation Oncology, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Wang+C%22">Wang C</searchLink>; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Shrager+JB%22">Shrager JB</searchLink>; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Berry+MF%22">Berry MF</searchLink>; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Backhus+L%22">Backhus L</searchLink>; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Lui+NS%22">Lui NS</searchLink>; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA; 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Department of Molecular Oncology, British Columbia Cancer Research Centre, Vancouver, BC V5Z 1L3, Canada.<br /><searchLink fieldCode="AU" term="%22Sotillo+E%22">Sotillo E</searchLink>; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Tran+P%22">Tran P</searchLink>; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Benson+JA%22">Benson JA</searchLink>; Department of Cardiothoracic Surgery - Thoracic Surgery, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Richards+R%22">Richards R</searchLink>; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA; Department of Pediatrics, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Labanieh+L%22">Labanieh L</searchLink>; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA; Department of Bioengineering, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Klysz+DD%22">Klysz DD</searchLink>; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Louis+DM%22">Louis DM</searchLink>; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Feldman+SA%22">Feldman SA</searchLink>; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Diehn+M%22">Diehn M</searchLink>; Institute for Stem Cell Biology and Regenerative Medicine Institute, Stanford University, Stanford, CA 94305, USA; Department of Radiation Oncology, Stanford University, Stanford, CA 94305, USA; Stanford Cancer Institute, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Weissman+IL%22">Weissman IL</searchLink>; Institute for Stem Cell Biology and Regenerative Medicine Institute, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+J%22">Zhang J</searchLink>; Department of Thoracic Head and Neck Medical Oncology, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA; Department of Genomic Medicine, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA.<br /><searchLink fieldCode="AU" term="%22Wistuba+II%22">Wistuba II</searchLink>; Department of Translational Molecular Pathology, Division of Pathology and Laboratory Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA.<br /><searchLink fieldCode="AU" term="%22Futreal+PA%22">Futreal PA</searchLink>; Department of Genomic Medicine, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA.<br /><searchLink fieldCode="AU" term="%22Heymach+JV%22">Heymach JV</searchLink>; Department of Thoracic Head and Neck Medical Oncology, Division of Cancer Medicine, MD Anderson Cancer Center, Houston, TX 77030, USA.<br /><searchLink fieldCode="AU" term="%22Garcia+KC%22">Garcia KC</searchLink>; Department of Molecular and Cellular Physiology and Structural Biology, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Mackall+CL%22">Mackall CL</searchLink>; Center for Cancer Cell Therapy, Stanford Cancer Institute, Stanford University, Stanford, CA 94305, USA; Department of Pediatrics, Stanford University, Stanford, CA 94305, USA; Department of Medicine, Stanford University, Stanford, CA 94305, USA.<br /><searchLink fieldCode="AU" term="%22Davis+MM%22">Davis MM</searchLink>; Institute for Immunity, Transplantation and Infection, Stanford University, Stanford, CA 94305, USA; Howard Hughes Medical Institute, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Microbiology and Immunology, Stanford University, Stanford, CA 94305, USA. Electronic address: mmdavis@stanford.edu.
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