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PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern.

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Title: PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern.
Authors: Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., Alpert T; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., Watkins AE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., de Jesus JG; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil., Claro IM; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil., Ferreira GM; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil.; Laboratório de Virologia, Instituto de Ciências Biomédicas, Universidade Federal de Uberlândia, Uberlândia, MG, Brazil., Crispim MAE; Fundação Hospitalar de Hematologia e Hemoterapia do Amazonas, Manaus, Brazil., Singh L; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa., Tegally H; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa., Anyaneji UJ; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa., Hodcroft EB; Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland., Mason CE; Tempus Labs, Chicago, IL 60654, USA., Khullar G; Tempus Labs, Chicago, IL 60654, USA., Metti J; Tempus Labs, Chicago, IL 60654, USA., Dudley JT; Tempus Labs, Chicago, IL 60654, USA., MacKay MJ; Tempus Labs, Chicago, IL 60654, USA., Nash M; Tempus Labs, Chicago, IL 60654, USA., Wang J; Department of Pathology, Yale University School of Medicine, New Haven, CT 06510, USA., Liu C; Department of Pathology, Yale University School of Medicine, New Haven, CT 06510, USA., Hui P; Department of Pathology, Yale University School of Medicine, New Haven, CT 06510, USA., Murphy S; Murphy Medical Associates, Greenwich, CT 06614, USA., Neal C; Murphy Medical Associates, Greenwich, CT 06614, USA., Laszlo E; Murphy Medical Associates, Greenwich, CT 06614, USA., Landry ML; Departments of Laboratory Medicine and Medicine, Yale School of Medicine, New Haven, CT 06510, USA., Muyombwe A; Connecticut State Department of Public Health, Rocky Hill, CT 06067, USA., Downing R; Connecticut State Department of Public Health, Rocky Hill, CT 06067, USA., Razeq J; Connecticut State Department of Public Health, Rocky Hill, CT 06067, USA., de Oliveira T; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa., Faria NR; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil.; MRC Centre for Global Infectious Disease Analysis, J-IDEA, Imperial College London, London, UK.; Department of Zoology, University of Oxford, Oxford, UK., Sabino EC; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil., Neher RA; Biozentrum, University of Basel, 4056 Basel, Switzerland.; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland., Fauver JR; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06510, USA.
Corporate Authors: Brazil-UK CADDE Genomic Network, NGS-SA
Source: MedRxiv : the preprint server for health sciences [medRxiv] 2021 Mar 12. Date of Electronic Publication: 2021 Mar 12.
Publication Type: Preprint; Journal Article
Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: PCR assay to enhance global surveillance for SARS-CoV-2 variants of concern.
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  Data: <searchLink fieldCode="AU" term="%22Vogels+CBF%22">Vogels CBF</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Breban+MI%22">Breban MI</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Alpert+T%22">Alpert T</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Petrone+ME%22">Petrone ME</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Watkins+AE%22">Watkins AE</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Ott+IM%22">Ott IM</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22de+Jesus+JG%22">de Jesus JG</searchLink>; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil.<br /><searchLink fieldCode="AU" term="%22Claro+IM%22">Claro IM</searchLink>; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil.<br /><searchLink fieldCode="AU" term="%22Ferreira+GM%22">Ferreira GM</searchLink>; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil.; Laboratório de Virologia, Instituto de Ciências Biomédicas, Universidade Federal de Uberlândia, Uberlândia, MG, Brazil.<br /><searchLink fieldCode="AU" term="%22Crispim+MAE%22">Crispim MAE</searchLink>; Fundação Hospitalar de Hematologia e Hemoterapia do Amazonas, Manaus, Brazil.<br /><searchLink fieldCode="AU" term="%22Singh+L%22">Singh L</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Tegally+H%22">Tegally H</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Anyaneji+UJ%22">Anyaneji UJ</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Hodcroft+EB%22">Hodcroft EB</searchLink>; Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland.<br /><searchLink fieldCode="AU" term="%22Mason+CE%22">Mason CE</searchLink>; Tempus Labs, Chicago, IL 60654, USA.<br /><searchLink fieldCode="AU" term="%22Khullar+G%22">Khullar G</searchLink>; Tempus Labs, Chicago, IL 60654, USA.<br /><searchLink fieldCode="AU" term="%22Metti+J%22">Metti J</searchLink>; Tempus Labs, Chicago, IL 60654, USA.<br /><searchLink fieldCode="AU" term="%22Dudley+JT%22">Dudley JT</searchLink>; Tempus Labs, Chicago, IL 60654, USA.<br /><searchLink fieldCode="AU" term="%22MacKay+MJ%22">MacKay MJ</searchLink>; Tempus Labs, Chicago, IL 60654, USA.<br /><searchLink fieldCode="AU" term="%22Nash+M%22">Nash M</searchLink>; Tempus Labs, Chicago, IL 60654, USA.<br /><searchLink fieldCode="AU" term="%22Wang+J%22">Wang J</searchLink>; Department of Pathology, Yale University School of Medicine, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Liu+C%22">Liu C</searchLink>; Department of Pathology, Yale University School of Medicine, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Hui+P%22">Hui P</searchLink>; Department of Pathology, Yale University School of Medicine, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Murphy+S%22">Murphy S</searchLink>; Murphy Medical Associates, Greenwich, CT 06614, USA.<br /><searchLink fieldCode="AU" term="%22Neal+C%22">Neal C</searchLink>; Murphy Medical Associates, Greenwich, CT 06614, USA.<br /><searchLink fieldCode="AU" term="%22Laszlo+E%22">Laszlo E</searchLink>; Murphy Medical Associates, Greenwich, CT 06614, USA.<br /><searchLink fieldCode="AU" term="%22Landry+ML%22">Landry ML</searchLink>; Departments of Laboratory Medicine and Medicine, Yale School of Medicine, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Muyombwe+A%22">Muyombwe A</searchLink>; Connecticut State Department of Public Health, Rocky Hill, CT 06067, USA.<br /><searchLink fieldCode="AU" term="%22Downing+R%22">Downing R</searchLink>; Connecticut State Department of Public Health, Rocky Hill, CT 06067, USA.<br /><searchLink fieldCode="AU" term="%22Razeq+J%22">Razeq J</searchLink>; Connecticut State Department of Public Health, Rocky Hill, CT 06067, USA.<br /><searchLink fieldCode="AU" term="%22de+Oliveira+T%22">de Oliveira T</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine & Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Faria+NR%22">Faria NR</searchLink>; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil.; MRC Centre for Global Infectious Disease Analysis, J-IDEA, Imperial College London, London, UK.; Department of Zoology, University of Oxford, Oxford, UK.<br /><searchLink fieldCode="AU" term="%22Sabino+EC%22">Sabino EC</searchLink>; Departamento de Molestias Infecciosas e Parasitarias and Instituto de Medicina Tropical da Faculdade de Medicina da Universidade de São Paulo, São Paulo, SP 05403-000, Brazil.<br /><searchLink fieldCode="AU" term="%22Neher+RA%22">Neher RA</searchLink>; Biozentrum, University of Basel, 4056 Basel, Switzerland.; Swiss Institute of Bioinformatics, 1015 Lausanne, Switzerland.<br /><searchLink fieldCode="AU" term="%22Fauver+JR%22">Fauver JR</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.<br /><searchLink fieldCode="AU" term="%22Grubaugh+ND%22">Grubaugh ND</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT 06510, USA.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06510, USA.
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