A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency.
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| Title: | A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency. |
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| Authors: | Jones W; Q2 Solutions - EA Genomics, 5927 S Miami Blvd., Morrisville, NC, 27560, USA. Wendell.Jones@q2labsolutions.com., Gong B; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Novoradovskaya N; Agilent Technologies, 11011 N Torrey Pines Rd., La Jolla, CA, 92037, USA., Li D; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Kusko R; Immuneering Corporation, One Broadway, 14th Floor, Cambridge, MA, 02142, USA., Richmond TA; Market & Application Development Bioinformatics, Roche Sequencing Solutions Inc., 4300 Hacienda Dr., Pleasanton, CA, 94588, USA., Johann DJ Jr; Winthrop P Rockefeller Cancer Institute, University of Arkansas for Medical Sciences, 4301 W Markham St., Little Rock, AR, 72205, USA., Bisgin H; Department of Computer Science, Engineering and Physics, University of Michigan-Flint, Flint, MI, 48502, USA., Sahraeian SME; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., 1301 Shoreway Rd., Suite 7 #300, Belmont, CA, 94002, USA., Bushel PR; National Institute of Environmental Health Sciences, Research Triangle Park, Durham, NC, 27709, USA., Pirooznia M; Bioinformatics and Computational Biology Laboratory, National Heart Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA., Wilkins K; Agilent Technologies, 5301 Stevens Creek Blvd., Santa Clara, CA, 95051, USA., Chierici M; Fondazione Bruno Kessler, 38123, Trento, Italy., Bao W; JMP Life Sciences, SAS Institute Inc., Cary, NC, 27519, USA., Basehore LS; Agilent Technologies, 11011 N Torrey Pines Rd., La Jolla, CA, 92037, USA., Lucas AB; Agilent Technologies, 5301 Stevens Creek Blvd., Santa Clara, CA, 95051, USA., Burgess D; (formerly) Research and Development, Roche Sequencing Solutions Inc., 500 South Rosa Rd., Madison, WI, 53719, USA., Butler DJ; Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University, New York, NY, 10065, USA., Cawley S; (formerly) Clinical Sequencing Division, Thermo Fisher Scientific, 180 Oyster Point Blvd., South San Francisco, CA, 94080, USA., Chang CJ; Stanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, USA., Chen G; Department of Immunology, Genomics and Microarray Core Facility, University of Texas Southwestern Medical Center, 5323 Harry Hine Blvd., Dallas, TX, 75390, USA., Chen T; University of Texas Southwestern Medical Center, 2330 Inwood Rd., Dallas, TX, 75390, USA., Chen YC; Bioinformatics and Computational Biology Laboratory, National Heart Lung and Blood Institute, National Institutes of Health, Bethesda, MD, 20892, USA., Craig DJ; Department of Medicine, College of Medicine and Life Sciences, The University of Toledo, Toledo, OH, 43614, USA., Del Pozo A; Institute of Medical and Molecular Genetics (INGEMM), Hospital Universitario La Paz, CIBERER Instituto de Salud Carlos III, 28046, Madrid, Spain., Foox J; Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University, New York, NY, 10065, USA., Francescatto M; Fondazione Bruno Kessler, 38123, Trento, Italy., Fu Y; Thermo Fisher Scientific, 110 Miller Ave., Ann Arbor, MI, 48104, USA., Furlanello C; Fondazione Bruno Kessler, 38123, Trento, Italy., Giorda K; Marketing, Integrated DNA Technologies, Inc., 1710 Commercial Park, Coralville, IA, 52241, USA., Grist KP; Q2 Solutions - EA Genomics, 5927 S Miami Blvd., Morrisville, NC, 27560, USA., Guan M; JMP Life Sciences, SAS Institute Inc., Cary, NC, 27519, USA., Hao Y; College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, China., Happe S; Agilent Technologies, 1834 State Hwy 71 West, Cedar Creek, TX, 78612, USA., Hariani G; Q2 Solutions - EA Genomics, 5927 S Miami Blvd., Morrisville, NC, 27560, USA., Haseley N; Illumina Inc., 5200 Illumina Way, San Diego, CA, 92122, USA., Jasper J; Q2 Solutions - EA Genomics, 5927 S Miami Blvd., Morrisville, NC, 27560, USA., Jurman G; Fondazione Bruno Kessler, 38123, Trento, Italy., Kreil DP; Bioinformatics Research, Institute of Molecular Biotechnology, Boku University Vienna, Vienna, Austria., Łabaj P; Małopolska Centre of Biotechnology, Jagiellonian University, Krakow, Poland.; Department of Biotechnology, Boku University, Vienna, Austria., Lai K; Bioinformatics, Integrated DNA Technologies, Inc., 1710 Commercial Park, Coralville, IA, 52241, USA., Li J; Kelly Government Solutions, Inc., Research Triangle Park, NC, 27709, USA., Li QZ; Department of Immunology, Genomics and Microarray Core Facility, University of Texas Southwestern Medical Center, 5323 Harry Hine Blvd., Dallas, TX, 75390, USA., Li Y; Center of Genome and Personalized Medicine, Institute of Cancer Stem Cell, Dalian Medical University, Dalian, Liaoning, China., Li Z; Center of Genome and Personalized Medicine, Institute of Cancer Stem Cell, Dalian Medical University, Dalian, Liaoning, China., Liu Z; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., López MS; Institute of Medical and Molecular Genetics (INGEMM), Hospital Universitario La Paz, CIBERER Instituto de Salud Carlos III, 28046, Madrid, Spain.; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands., Miclaus K; JMP Life Sciences, SAS Institute Inc., Cary, NC, 27519, USA., Miller R; Agilent Technologies, 5301 Stevens Creek Blvd., Santa Clara, CA, 95051, USA., Mittal VK; Thermo Fisher Scientific, 110 Miller Ave., Ann Arbor, MI, 48104, USA., Mohiyuddin M; Bioinformatics Research & Early Development, Roche Sequencing Solutions Inc., 1301 Shoreway Rd., Suite 7 #300, Belmont, CA, 94002, USA., Pabón-Peña C; Agilent Technologies, 5301 Stevens Creek Blvd., Santa Clara, CA, 95051, USA., Parsons BL; Division of Genetic and Molecular Toxicology, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Qiu F; Research and Development, Burning Rock Biotech, Shanghai, 201114, China., Scherer A; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands.; Institute for Molecular Medicine Finland (FIMM), Nordic EMBL Partnership for Molecular Medicine, HiLIFE Unit, Biomedicum Helsinki 2U (D302b), FI-00014 University of Helsinki, P.O. Box 20 (Tukholmankatu 8), Helsinki, Finland., Shi T; Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, School of Life Sciences, East China Normal University, 500 Dongchuan Rd, Shanghai, 200241, China., Stiegelmeyer S; University of North Carolina Health, 101 Manning Drive, Chapel Hill, NC, 27514, USA., Suo C; Department of Epidemiology, School of Public Health, Fudan University, Shanghai, China., Tom N; EATRIS ERIC- European Infrastructure for Translational Medicine, De Boelelaan 1118, 1081, HZ, Amsterdam, The Netherlands.; Center of Molecular Medicine, Central European Institute of Technology, Masaryk University, Kamenice 5, 625 00, Brno, Czech Republic., Wang D; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Wen Z; College of Chemistry, Sichuan University, Chengdu, 610064, Sichuan, China., Wu L; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Xiao W; Stanford Genome Technology Center, Stanford University, Palo Alto, CA, 94304, USA.; Massachusetts General Hospital, Harvard Medical School, Boston, MA, 02114, USA., Xu C; Research and Development, QIAGEN Sciences Inc., Frederick, MD, 21703, USA., Yu Y; State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Hospital/Cancer Institute, Fudan University, Shanghai, 200438, China., Zhang J; State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Hospital/Cancer Institute, Fudan University, Shanghai, 200438, China., Zhang Y; University of Arkansas at Little Rock, Little Rock, AR, 72204, USA., Zhang Z; Research and Development, Burning Rock Biotech, Shanghai, 201114, China., Zheng Y; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA.; State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Hospital/Cancer Institute, Fudan University, Shanghai, 200438, China., Mason CE; Department of Physiology and Biophysics, Weill Cornell Medicine, Cornell University, New York, NY, 10065, USA., Willey JC; Departments of Medicine, Pathology, and Cancer Biology, College of Medicine and Life Sciences, University of Toledo Health Sciences Campus, 3000 Arlington Ave, Toledo, OH, 43614, USA., Tong W; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA., Shi L; State Key Laboratory of Genetic Engineering, School of Life Sciences and Shanghai Cancer Hospital/Cancer Institute, Fudan University, Shanghai, 200438, China.; Human Phenome Institute, Fudan University, Shanghai, 201203, China.; Fudan-Gospel Joint Research Center for Precision Medicine, Fudan University, Shanghai, 200438, China., Xu J; Division of Bioinformatics and Biostatistics, National Center for Toxicological Research, US Food and Drug Administration, Jefferson, AR, 72079, USA. Joshua.xu@fda.hhs.gov. |
| Source: | Genome biology [Genome Biol] 2021 Apr 16; Vol. 22 (1), pp. 111. Date of Electronic Publication: 2021 Apr 16. |
| Publication Type: | Journal Article; Research Support, Non-U.S. Gov't |
| Journal Info: | Publisher: BioMed Central Ltd Country of Publication: England NLM ID: 100960660 Publication Model: Electronic Cited Medium: Internet ISSN: 1474-760X (Electronic) Linking ISSN: 14747596 NLM ISO Abbreviation: Genome Biol Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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