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Hypergraph models of biological networks to identify genes critical to pathogenic viral response.

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Title: Hypergraph models of biological networks to identify genes critical to pathogenic viral response.
Authors: Feng S; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA., Heath E; Department of Mathematics, University of Illinois, Urbana-Champaign, IL, USA., Jefferson B; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA., Joslyn C; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA.; Systems Science Program, Portland State University, Portland, OR, USA., Kvinge H; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA., Mitchell HD; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA., Praggastis B; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA., Eisfeld AJ; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA., Sims AC; Signature Science and Technology Division, Pacific Northwest National Laboratory, Richland, WA, USA., Thackray LB; Department of Medicine, Washington University School of Medicine, 63110, Saint Louis, MO, USA., Fan S; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA., Walters KB; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA., Halfmann PJ; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA., Westhoff-Smith D; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA., Tan Q; Department of Medicine, Washington University School of Medicine, 63110, Saint Louis, MO, USA., Menachery VD; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.; Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX, USA., Sheahan TP; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Cockrell AS; KNOWBIO LLC., Durham, NC, 27703, USA., Kocher JF; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Stratton KG; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA., Heller NC; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA., Bramer LM; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA., Diamond MS; Department of Medicine, Washington University School of Medicine, 63110, Saint Louis, MO, USA.; Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA., Baric RS; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Waters KM; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.; Department of Comparative Medicine, University of Washington, Seattle, WA, USA., Kawaoka Y; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA.; Division of Virology, Department of Microbiology and Immunology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.; ERATO Infection-Induced Host Responses Project, Saitama, 332-0012, Japan.; Department of Special Pathogens, International Research Center for Infectious Diseases, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan., McDermott JE; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.; Department of Molecular Microbiology and Immunology, Oregon Health and Science University, Portland, OR, USA., Purvine E; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA. emilie.purvine@pnnl.gov.
Source: BMC bioinformatics [BMC Bioinformatics] 2021 May 29; Vol. 22 (1), pp. 287. Date of Electronic Publication: 2021 May 29.
Publication Type: Journal Article
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 100965194 Publication Model: Electronic Cited Medium: Internet ISSN: 1471-2105 (Electronic) Linking ISSN: 14712105 NLM ISO Abbreviation: BMC Bioinformatics Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Feng+S%22">Feng S</searchLink>; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.<br /><searchLink fieldCode="AU" term="%22Heath+E%22">Heath E</searchLink>; Department of Mathematics, University of Illinois, Urbana-Champaign, IL, USA.<br /><searchLink fieldCode="AU" term="%22Jefferson+B%22">Jefferson B</searchLink>; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Joslyn+C%22">Joslyn C</searchLink>; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA.; Systems Science Program, Portland State University, Portland, OR, USA.<br /><searchLink fieldCode="AU" term="%22Kvinge+H%22">Kvinge H</searchLink>; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Mitchell+HD%22">Mitchell HD</searchLink>; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.<br /><searchLink fieldCode="AU" term="%22Praggastis+B%22">Praggastis B</searchLink>; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Eisfeld+AJ%22">Eisfeld AJ</searchLink>; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA.<br /><searchLink fieldCode="AU" term="%22Sims+AC%22">Sims AC</searchLink>; Signature Science and Technology Division, Pacific Northwest National Laboratory, Richland, WA, USA.<br /><searchLink fieldCode="AU" term="%22Thackray+LB%22">Thackray LB</searchLink>; Department of Medicine, Washington University School of Medicine, 63110, Saint Louis, MO, USA.<br /><searchLink fieldCode="AU" term="%22Fan+S%22">Fan S</searchLink>; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA.<br /><searchLink fieldCode="AU" term="%22Walters+KB%22">Walters KB</searchLink>; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA.<br /><searchLink fieldCode="AU" term="%22Halfmann+PJ%22">Halfmann PJ</searchLink>; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA.<br /><searchLink fieldCode="AU" term="%22Westhoff-Smith+D%22">Westhoff-Smith D</searchLink>; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA.<br /><searchLink fieldCode="AU" term="%22Tan+Q%22">Tan Q</searchLink>; Department of Medicine, Washington University School of Medicine, 63110, Saint Louis, MO, USA.<br /><searchLink fieldCode="AU" term="%22Menachery+VD%22">Menachery VD</searchLink>; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.; Department of Microbiology and Immunology, University of Texas Medical Branch, Galveston, TX, USA.<br /><searchLink fieldCode="AU" term="%22Sheahan+TP%22">Sheahan TP</searchLink>; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.<br /><searchLink fieldCode="AU" term="%22Cockrell+AS%22">Cockrell AS</searchLink>; KNOWBIO LLC., Durham, NC, 27703, USA.<br /><searchLink fieldCode="AU" term="%22Kocher+JF%22">Kocher JF</searchLink>; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.<br /><searchLink fieldCode="AU" term="%22Stratton+KG%22">Stratton KG</searchLink>; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.<br /><searchLink fieldCode="AU" term="%22Heller+NC%22">Heller NC</searchLink>; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Bramer+LM%22">Bramer LM</searchLink>; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.<br /><searchLink fieldCode="AU" term="%22Diamond+MS%22">Diamond MS</searchLink>; Department of Medicine, Washington University School of Medicine, 63110, Saint Louis, MO, USA.; Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO, USA.; Department of Molecular Microbiology, Washington University School of Medicine, St. Louis, MO, USA.<br /><searchLink fieldCode="AU" term="%22Baric+RS%22">Baric RS</searchLink>; Department of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.<br /><searchLink fieldCode="AU" term="%22Waters+KM%22">Waters KM</searchLink>; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.; Department of Comparative Medicine, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Kawaoka+Y%22">Kawaoka Y</searchLink>; Department of Pathobiological Sciences, School of Veterinary Medicine, Influenza Research Institute, University of Wisconsin-Madison, 575 Science Drive, 53711, Madison, WI, USA.; Division of Virology, Department of Microbiology and Immunology, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.; ERATO Infection-Induced Host Responses Project, Saitama, 332-0012, Japan.; Department of Special Pathogens, International Research Center for Infectious Diseases, Institute of Medical Science, University of Tokyo, Tokyo, 108-8639, Japan.<br /><searchLink fieldCode="AU" term="%22McDermott+JE%22">McDermott JE</searchLink>; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.; Department of Molecular Microbiology and Immunology, Oregon Health and Science University, Portland, OR, USA.<br /><searchLink fieldCode="AU" term="%22Purvine+E%22">Purvine E</searchLink>; Computing and Analytics Division, Pacific Northwest National Laboratory, Seattle, WA, USA. emilie.purvine@pnnl.gov.
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