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Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids.

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Title: Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids.
Authors: Gu W; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA. weigu@stanford.edu.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA. weigu@stanford.edu.; Department of Pathology, Stanford University, Stanford, CA, 94305, USA. weigu@stanford.edu.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA. weigu@stanford.edu., Talevich E; DNANexus, Mountain View, CA, 94040, USA., Hsu E; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Qi Z; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Urisman A; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA., Federman S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA., Gopez A; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA., Arevalo S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA., Gottschall M; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Liao L; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Tung J; Department of Pathology, Stanford University, Stanford, CA, 94305, USA., Chen L; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Lim H; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Ho C; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Kasowski M; Department of Pathology, Stanford University, Stanford, CA, 94305, USA., Oak J; Department of Pathology, Stanford University, Stanford, CA, 94305, USA.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Holmes BJ; Department of Pathology, Stanford University, Stanford, CA, 94305, USA.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA., Yeh I; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA., Yu J; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Wang L; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Miller S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA., DeRisi JL; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, 94107, USA.; Chan Zuckerberg Biohub, San Francisco, CA, 94107, USA., Prakash S; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA., Simko J; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA., Chiu CY; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA. charles.chiu@ucsf.edu.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA. charles.chiu@ucsf.edu.; Department of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, CA, 94107, USA. charles.chiu@ucsf.edu.
Source: Genome medicine [Genome Med] 2021 Jun 01; Vol. 13 (1), pp. 98. Date of Electronic Publication: 2021 Jun 01.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101475844 Publication Model: Electronic Cited Medium: Internet ISSN: 1756-994X (Electronic) Linking ISSN: 1756994X NLM ISO Abbreviation: Genome Med Subsets: MEDLINE
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  Data: Detection of cryptogenic malignancies from metagenomic whole genome sequencing of body fluids.
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  Data: <searchLink fieldCode="AU" term="%22Gu+W%22">Gu W</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA. weigu@stanford.edu.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA. weigu@stanford.edu.; Department of Pathology, Stanford University, Stanford, CA, 94305, USA. weigu@stanford.edu.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA. weigu@stanford.edu.<br /><searchLink fieldCode="AU" term="%22Talevich+E%22">Talevich E</searchLink>; DNANexus, Mountain View, CA, 94040, USA.<br /><searchLink fieldCode="AU" term="%22Hsu+E%22">Hsu E</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Qi+Z%22">Qi Z</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Urisman+A%22">Urisman A</searchLink>; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Federman+S%22">Federman S</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA.<br /><searchLink fieldCode="AU" term="%22Gopez+A%22">Gopez A</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA.<br /><searchLink fieldCode="AU" term="%22Arevalo+S%22">Arevalo S</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA.<br /><searchLink fieldCode="AU" term="%22Gottschall+M%22">Gottschall M</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Liao+L%22">Liao L</searchLink>; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA.<br /><searchLink fieldCode="AU" term="%22Tung+J%22">Tung J</searchLink>; Department of Pathology, Stanford University, Stanford, CA, 94305, USA.<br /><searchLink fieldCode="AU" term="%22Chen+L%22">Chen L</searchLink>; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA.<br /><searchLink fieldCode="AU" term="%22Lim+H%22">Lim H</searchLink>; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA.<br /><searchLink fieldCode="AU" term="%22Ho+C%22">Ho C</searchLink>; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA.<br /><searchLink fieldCode="AU" term="%22Kasowski+M%22">Kasowski M</searchLink>; Department of Pathology, Stanford University, Stanford, CA, 94305, USA.<br /><searchLink fieldCode="AU" term="%22Oak+J%22">Oak J</searchLink>; Department of Pathology, Stanford University, Stanford, CA, 94305, USA.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA.<br /><searchLink fieldCode="AU" term="%22Holmes+BJ%22">Holmes BJ</searchLink>; Department of Pathology, Stanford University, Stanford, CA, 94305, USA.; Stanford Health Care, Stanford University, Stanford, CA, 94305, USA.<br /><searchLink fieldCode="AU" term="%22Yeh+I%22">Yeh I</searchLink>; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Yu+J%22">Yu J</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Wang+L%22">Wang L</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Miller+S%22">Miller S</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA.<br /><searchLink fieldCode="AU" term="%22DeRisi+JL%22">DeRisi JL</searchLink>; Department of Biochemistry and Biophysics, University of California San Francisco, San Francisco, CA, 94107, USA.; Chan Zuckerberg Biohub, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Prakash+S%22">Prakash S</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Simko+J%22">Simko J</searchLink>; Department of Pathology, University of California San Francisco, San Francisco, CA, 94107, USA.<br /><searchLink fieldCode="AU" term="%22Chiu+CY%22">Chiu CY</searchLink>; Department of Laboratory Medicine, University of California San Francisco, San Francisco, CA, 94107, USA. charles.chiu@ucsf.edu.; UCSF-Abbott Viral Diagnostics and Discovery Center, San Francisco, CA, 91407, USA. charles.chiu@ucsf.edu.; Department of Medicine, Division of Infectious Diseases, University of California San Francisco, San Francisco, CA, 94107, USA. charles.chiu@ucsf.edu.
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  Data: <searchLink fieldCode="JN" term="%22101475844%22">Genome medicine</searchLink> [Genome Med] 2021 Jun 01; Vol. 13 (1), pp. 98. <i>Date of Electronic Publication: </i>2021 Jun 01.
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