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PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design.

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Title: PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design.
Authors: Le KH; T. C. Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland, United States., Adolf-Bryfogle J; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, United States., Klima JC; Institute for Protein Design, University of Washington, Seattle, Washington, United States.; Department of Biochemistry, University of Washington, Seattle, Washington, United States.; Lyell Immunopharma, Inc., Seattle, Washington, United States., Lyskov S; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States., Labonte J; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States.; Department of Chemistry, Franklin & Marshall College, Lancaster, Pennsylvania, United States., Bertolani S; Department of Chemistry, Department of Biochemistry and Molecular Medicine, Genome Center, University of California, Davis, Davis, California, United States., Burman SSR; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States., Leaver-Fay A; Department of Biochemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States., Weitzner B; Institute for Protein Design, University of Washington, Seattle, Washington, United States.; Department of Biochemistry, University of Washington, Seattle, Washington, United States.; Lyell Immunopharma, Inc., Seattle, Washington, United States., Maguire J; Program in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States., Rangan R; Program in Biophysics, Stanford University, Stanford, California, United States., Adrianowycz MA; Program in Biophysics, Stanford University, Stanford, California, United States., Alford RF; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States., Adal A; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States., Nance ML; Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland, United States., Wu Y; Vaccine and Immunotherapy Center, Wistar Institute, Philadelphia, Pennsylvania, United States., Willis J; RubrYc Therapeutics, San Ramon, California, United States., Kulp DW; Vaccine and Immunotherapy Center, Wistar Institute, Philadelphia, Pennsylvania, United States., Das R; Program in Biophysics, Stanford University, Stanford, California, United States., Dunbrack RL Jr; Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States., Schief W; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, United States., Kuhlman B; Department of Biochemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States.; Program in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States., Siegel JB; Department of Chemistry, Department of Biochemistry and Molecular Medicine, Genome Center, University of California, Davis, Davis, California, United States., Gray JJ; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States.; Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland, United States.
Source: Biophysicist (Rockville, Md.) [Biophysicist (Rockv)] 2021 Apr; Vol. 2 (1), pp. 108-122. Date of Electronic Publication: 2021 Apr 14.
Publication Type: Journal Article
Journal Info: Publisher: The Biophysical Society Country of Publication: United States NLM ID: 101764176 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2578-6970 (Electronic) Linking ISSN: 25786970 NLM ISO Abbreviation: Biophysicist (Rockv) Subsets: PubMed not MEDLINE
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  Data: PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design.
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Jenkins Department of Biophysics, Johns Hopkins University, Baltimore, Maryland, United States.<br /><searchLink fieldCode="AU" term="%22Adolf-Bryfogle+J%22">Adolf-Bryfogle J</searchLink>; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, United States.<br /><searchLink fieldCode="AU" term="%22Klima+JC%22">Klima JC</searchLink>; Institute for Protein Design, University of Washington, Seattle, Washington, United States.; Department of Biochemistry, University of Washington, Seattle, Washington, United States.; Lyell Immunopharma, Inc., Seattle, Washington, United States.<br /><searchLink fieldCode="AU" term="%22Lyskov+S%22">Lyskov S</searchLink>; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States.<br /><searchLink fieldCode="AU" term="%22Labonte+J%22">Labonte J</searchLink>; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States.; Department of Chemistry, Franklin & Marshall College, Lancaster, Pennsylvania, United States.<br /><searchLink fieldCode="AU" term="%22Bertolani+S%22">Bertolani S</searchLink>; Department of Chemistry, Department of Biochemistry and Molecular Medicine, Genome Center, University of California, Davis, Davis, California, United States.<br /><searchLink fieldCode="AU" term="%22Burman+SSR%22">Burman SSR</searchLink>; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States.<br /><searchLink fieldCode="AU" term="%22Leaver-Fay+A%22">Leaver-Fay A</searchLink>; Department of Biochemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States.<br /><searchLink fieldCode="AU" term="%22Weitzner+B%22">Weitzner B</searchLink>; Institute for Protein Design, University of Washington, Seattle, Washington, United States.; Department of Biochemistry, University of Washington, Seattle, Washington, United States.; Lyell Immunopharma, Inc., Seattle, Washington, United States.<br /><searchLink fieldCode="AU" term="%22Maguire+J%22">Maguire J</searchLink>; Program in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States.<br /><searchLink fieldCode="AU" term="%22Rangan+R%22">Rangan R</searchLink>; Program in Biophysics, Stanford University, Stanford, California, United States.<br /><searchLink fieldCode="AU" term="%22Adrianowycz+MA%22">Adrianowycz MA</searchLink>; Program in Biophysics, Stanford University, Stanford, California, United States.<br /><searchLink fieldCode="AU" term="%22Alford+RF%22">Alford RF</searchLink>; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States.<br /><searchLink fieldCode="AU" term="%22Adal+A%22">Adal A</searchLink>; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States.<br /><searchLink fieldCode="AU" term="%22Nance+ML%22">Nance ML</searchLink>; Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland, United States.<br /><searchLink fieldCode="AU" term="%22Wu+Y%22">Wu Y</searchLink>; Vaccine and Immunotherapy Center, Wistar Institute, Philadelphia, Pennsylvania, United States.<br /><searchLink fieldCode="AU" term="%22Willis+J%22">Willis J</searchLink>; RubrYc Therapeutics, San Ramon, California, United States.<br /><searchLink fieldCode="AU" term="%22Kulp+DW%22">Kulp DW</searchLink>; Vaccine and Immunotherapy Center, Wistar Institute, Philadelphia, Pennsylvania, United States.<br /><searchLink fieldCode="AU" term="%22Das+R%22">Das R</searchLink>; Program in Biophysics, Stanford University, Stanford, California, United States.<br /><searchLink fieldCode="AU" term="%22Dunbrack+RL+Jr%22">Dunbrack RL Jr</searchLink>; Fox Chase Cancer Center, Philadelphia, Pennsylvania, United States.<br /><searchLink fieldCode="AU" term="%22Schief+W%22">Schief W</searchLink>; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, California, United States.<br /><searchLink fieldCode="AU" term="%22Kuhlman+B%22">Kuhlman B</searchLink>; Department of Biochemistry, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States.; Program in Bioinformatics and Computational Biology, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, United States.<br /><searchLink fieldCode="AU" term="%22Siegel+JB%22">Siegel JB</searchLink>; Department of Chemistry, Department of Biochemistry and Molecular Medicine, Genome Center, University of California, Davis, Davis, California, United States.<br /><searchLink fieldCode="AU" term="%22Gray+JJ%22">Gray JJ</searchLink>; Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, Maryland, United States.; Program in Molecular Biophysics, Johns Hopkins University, Baltimore, Maryland, United States.
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