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Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage.

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Title: Emergence and phenotypic characterization of the global SARS-CoV-2 C.1.2 lineage.
Authors: Scheepers C; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa., Everatt J; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa., Amoako DG; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa., Tegally H; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, 7600, Stellenbosch, South Africa., Wibmer CK; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa., Mnguni A; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa., Ismail A; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa., Mahlangu B; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa., Lambson BE; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa., Martin DP; Institute of Infectious Disease and Molecular Medicine, University of Cape Town, 7925, Cape Town, South Africa., Wilkinson E; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, 7600, Stellenbosch, South Africa., San JE; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, 7600, Stellenbosch, South Africa., Giandhari J; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa., Manamela N; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa., Ntuli N; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa., Kgagudi P; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa., Cele S; Africa Health Research Institute, 4001, Durban, South Africa.; School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, 4041, Durban, South Africa., Richardson SI; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa., Pillay S; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa., Mohale T; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa., Ramphal U; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa., Naidoo Y; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, 7600, Stellenbosch, South Africa., Khumalo ZT; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, 0110, Onderstepoort, South Africa., Kwatra G; South African Medical Research Council Vaccines and Infectious Diseases Analytics Research Unit, University of the Witwatersrand, 2000, Johannesburg, South Africa.; Department of Clinical Microbiology, Christian Medical College, Vellore, 632004, India., Gray G; South African Medical Research Council, 7505, Cape Town, South Africa., Bekker LG; Desmond Tutu HIV Centre, 7925, Cape Town, South Africa., Madhi SA; South African Medical Research Council Vaccines and Infectious Diseases Analytics Research Unit, University of the Witwatersrand, 2000, Johannesburg, South Africa., Baillie V; South African Medical Research Council Vaccines and Infectious Diseases Analytics Research Unit, University of the Witwatersrand, 2000, Johannesburg, South Africa., Van Voorhis WC; Center for Emerging and Re-emerging Infectious Diseases (CERID), University of Washington, Washington, 98195, USA., Treurnicht FK; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Faculty of Health Sciences, University of the Witwatersrand, 2193, Johannesburg, South Africa., Venter M; Zoonotic Arbo and Respiratory Virus Research Programme, Department of Medical Virology, Faculty of Health, University of Pretoria, 0031, Gezina, South Africa., Mlisana K; School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, 4041, Durban, South Africa.; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Clinical Microbiology and Infectious Diseases Unit, Faulty of Health Sciences, University of Witwatersrand, 2132, Johannesburg, South Africa., Wolter N; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Faculty of Health Sciences, University of the Witwatersrand, 2193, Johannesburg, South Africa., Sigal A; Africa Health Research Institute, 4001, Durban, South Africa.; School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, 4041, Durban, South Africa.; Max Planck Institute for Infection Biology, 10117, Berlin, Germany., Williamson C; Institute of Infectious Disease and Molecular Medicine, University of Cape Town, 7925, Cape Town, South Africa.; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), 7925, Cape Town, South Africa., Hsiao NY; Institute of Infectious Disease and Molecular Medicine, University of Cape Town, 7925, Cape Town, South Africa.; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), 7925, Cape Town, South Africa., Msomi N; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Discipline of Virology, University of KwaZulu-Natal, 4041, Durban, South Africa., Maponga T; Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, 7602, Cape Town, South Africa., Preiser W; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, 7602, Cape Town, South Africa., Makatini Z; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Faculty of Health Sciences, University of the Witwatersrand, 2193, Johannesburg, South Africa., Lessells R; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa., Moore PL; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa.; Institute of Infectious Disease and Molecular Medicine, University of Cape Town, 7925, Cape Town, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), 4013, KwaZulu-Natal, South Africa., de Oliveira T; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, 7600, Stellenbosch, South Africa., von Gottberg A; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Faculty of Health Sciences, University of the Witwatersrand, 2193, Johannesburg, South Africa.; Faculty of Health Sciences, University of Cape Town, 7935, Cape Town, South Africa., Bhiman JN; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa. jinalb@nicd.ac.za.; Faculty of Health Sciences, University of the Witwatersrand, 2193, Johannesburg, South Africa. jinalb@nicd.ac.za.
Source: Nature communications [Nat Commun] 2022 Apr 08; Vol. 13 (1), pp. 1976. Date of Electronic Publication: 2022 Apr 08.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
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National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa.<br /><searchLink fieldCode="AU" term="%22Martin+DP%22">Martin DP</searchLink>; Institute of Infectious Disease and Molecular Medicine, University of Cape Town, 7925, Cape Town, South Africa.<br /><searchLink fieldCode="AU" term="%22Wilkinson+E%22">Wilkinson E</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, 7600, Stellenbosch, South Africa.<br /><searchLink fieldCode="AU" term="%22San+JE%22">San JE</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; 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National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa.<br /><searchLink fieldCode="AU" term="%22Cele+S%22">Cele S</searchLink>; Africa Health Research Institute, 4001, Durban, South Africa.; School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, 4041, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Richardson+SI%22">Richardson SI</searchLink>; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; SA MRC Antibody Immunity Research Unit, School of Pathology, Faculty of Health Sciences, University of the Witwatersrand, 2132, Johannesburg, South Africa.<br /><searchLink fieldCode="AU" term="%22Pillay+S%22">Pillay S</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Mohale+T%22">Mohale T</searchLink>; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.<br /><searchLink fieldCode="AU" term="%22Ramphal+U%22">Ramphal U</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Naidoo+Y%22">Naidoo Y</searchLink>; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, 7600, Stellenbosch, South Africa.<br /><searchLink fieldCode="AU" term="%22Khumalo+ZT%22">Khumalo ZT</searchLink>; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Department of Veterinary Tropical Diseases, Faculty of Veterinary Science, University of Pretoria, 0110, Onderstepoort, South Africa.<br /><searchLink fieldCode="AU" term="%22Kwatra+G%22">Kwatra G</searchLink>; 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Institute of Infectious Disease and Molecular Medicine, University of Cape Town, 7925, Cape Town, South Africa.; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Wellcome Centre for Infectious Diseases Research in Africa (CIDRI-Africa), 7925, Cape Town, South Africa.<br /><searchLink fieldCode="AU" term="%22Msomi+N%22">Msomi N</searchLink>; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Discipline of Virology, University of KwaZulu-Natal, 4041, Durban, South Africa.<br /><searchLink fieldCode="AU" term="%22Maponga+T%22">Maponga T</searchLink>; Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, 7602, Cape Town, South Africa.<br /><searchLink fieldCode="AU" term="%22Preiser+W%22">Preiser W</searchLink>; National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Division of Medical Virology, Faculty of Medicine and Health Sciences, Stellenbosch University, Tygerberg, 7602, Cape Town, South Africa.<br /><searchLink fieldCode="AU" term="%22Makatini+Z%22">Makatini Z</searchLink>; 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KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), Nelson R Mandela School of Medicine, University of KwaZulu-Natal, 4001, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, 7600, Stellenbosch, South Africa.<br /><searchLink fieldCode="AU" term="%22von+Gottberg+A%22">von Gottberg A</searchLink>; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa.; Faculty of Health Sciences, University of the Witwatersrand, 2193, Johannesburg, South Africa.; Faculty of Health Sciences, University of Cape Town, 7935, Cape Town, South Africa.<br /><searchLink fieldCode="AU" term="%22Bhiman+JN%22">Bhiman JN</searchLink>; National Institute for Communicable Diseases (NICD) of the National Health Laboratory Service (NHLS), 2131, Johannesburg, South Africa. jinalb@nicd.ac.za.; Faculty of Health Sciences, University of the Witwatersrand, 2193, Johannesburg, South Africa. jinalb@nicd.ac.za.
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            NameFull: Gray G
      – PersonEntity:
          Name:
            NameFull: Bekker LG
      – PersonEntity:
          Name:
            NameFull: Madhi SA
      – PersonEntity:
          Name:
            NameFull: Baillie V
      – PersonEntity:
          Name:
            NameFull: Van Voorhis WC
      – PersonEntity:
          Name:
            NameFull: Treurnicht FK
      – PersonEntity:
          Name:
            NameFull: Venter M
      – PersonEntity:
          Name:
            NameFull: Mlisana K
      – PersonEntity:
          Name:
            NameFull: Wolter N
      – PersonEntity:
          Name:
            NameFull: Sigal A
      – PersonEntity:
          Name:
            NameFull: Williamson C
      – PersonEntity:
          Name:
            NameFull: Hsiao NY
      – PersonEntity:
          Name:
            NameFull: Msomi N
      – PersonEntity:
          Name:
            NameFull: Maponga T
      – PersonEntity:
          Name:
            NameFull: Preiser W
      – PersonEntity:
          Name:
            NameFull: Makatini Z
      – PersonEntity:
          Name:
            NameFull: Lessells R
      – PersonEntity:
          Name:
            NameFull: Moore PL
      – PersonEntity:
          Name:
            NameFull: de Oliveira T
      – PersonEntity:
          Name:
            NameFull: von Gottberg A
      – PersonEntity:
          Name:
            NameFull: Bhiman JN
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 08
              M: 04
              Text: 2022 Apr 08
              Type: published
              Y: 2022
          Identifiers:
            – Type: issn-electronic
              Value: 2041-1723
          Numbering:
            – Type: volume
              Value: 13
            – Type: issue
              Value: 1
          Titles:
            – TitleFull: Nature communications
              Type: main
ResultId 1