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Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota.

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Title: Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota.
Authors: Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA. mary.petrone@yale.edu., Rothman JE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Ott IM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Russell A; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA., Lasek-Nesselquist E; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.; Department of Biomedical Sciences, University at Albany, SUNY, Albany, NY, 12222, USA., Badr H; Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, 21218, MD, USA., Kelly K; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA., Omerza G; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA., Renzette N; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA., Watkins AE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Kalinich CC; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Alpert T; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Brito AF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Earnest R; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Tikhonova IR; Yale Center for Genome Analysis, Yale University, New Haven, CT, 06510, USA., Castaldi C; Yale Center for Genome Analysis, Yale University, New Haven, CT, 06510, USA., Kelly JP; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA., Shudt M; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA., Plitnick J; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.; Department of Biomedical Sciences, University at Albany, SUNY, Albany, NY, 12222, USA., Schneider E; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.; Department of Biomedical Sciences, University at Albany, SUNY, Albany, NY, 12222, USA., Murphy S; Murphy Medical Associates, Greenwich, CT, 06830, USA., Neal C; Murphy Medical Associates, Greenwich, CT, 06830, USA., Laszlo E; Murphy Medical Associates, Greenwich, CT, 06830, USA., Altajar A; Murphy Medical Associates, Greenwich, CT, 06830, USA., Pearson C; Connecticut State Department of Public Health, Rocky Hill, CT, 06067, USA., Muyombwe A; Connecticut State Department of Public Health, Rocky Hill, CT, 06067, USA., Downing R; Connecticut State Department of Public Health, Rocky Hill, CT, 06067, USA., Razeq J; Connecticut State Department of Public Health, Rocky Hill, CT, 06067, USA., Niccolai L; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Wilson MS; Yale Health Center, Yale University, New Haven, CT, 06510, USA., Anderson ML; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Wang J; Department of Pathology, Yale University School of Medicine, New Haven, CT, 06510, USA., Liu C; Department of Pathology, Yale University School of Medicine, New Haven, CT, 06510, USA., Hui P; Department of Pathology, Yale University School of Medicine, New Haven, CT, 06510, USA., Mane S; Yale Center for Genome Analysis, Yale University, New Haven, CT, 06510, USA., Taylor BP; Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA., Hanage WP; Center for Communicable Disease Dynamics, Department of Epidemiology, Harvard T. H. Chan School of Public Health, Boston, MA, 02115, USA., Landry ML; Departments of Laboratory Medicine and Medicine, Yale University School of Medicine, New Haven, CT, 06510, USA., Peaper DR; Departments of Laboratory Medicine and Medicine, Yale University School of Medicine, New Haven, CT, 06510, USA., Bilguvar K; Yale Center for Genome Analysis, Yale University, New Haven, CT, 06510, USA.; Department of Genetics, Yale University School of Medicine, New Haven, CT, 06510, USA., Fauver JR; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Vogels CBF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., Gardner LM; Department of Civil and Systems Engineering, Johns Hopkins University, Baltimore, 21218, MD, USA., Pitzer VE; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA., St George K; Wadsworth Center, New York State Department of Health, Albany, NY, 12208, USA.; Department of Biomedical Sciences, University at Albany, SUNY, Albany, NY, 12222, USA., Adams MD; The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, 06510, USA. nathan.grubaugh@yale.edu.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, 06510, USA. nathan.grubaugh@yale.edu.
Source: Communications biology [Commun Biol] 2022 May 11; Vol. 5 (1), pp. 439. Date of Electronic Publication: 2022 May 11.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, P.H.S.
Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
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ISSN:2399-3642
DOI:10.1038/s42003-022-03347-3