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Optimizing the Illumina COVIDSeq laboratorial and bioinformatics pipeline on thousands of samples for SARS-CoV-2 Variants of Concern tracking.

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Title: Optimizing the Illumina COVIDSeq laboratorial and bioinformatics pipeline on thousands of samples for SARS-CoV-2 Variants of Concern tracking.
Authors: Donzelli S; Oncogenomics and Epigenetics, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Ciuffreda L; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Pontone M; Microbiology and Virology Unit, IRCCS San Gallicano Dermatological Institute, Rome, Italy., Betti M; Biostatistics, Bioinformatics and Clinical Trial Center, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Massacci A; Biostatistics, Bioinformatics and Clinical Trial Center, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Mottini C; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy., De Nicola F; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Orlandi G; Scientific Direction, IRCCS San Gallicano Dermatological Institute, Rome, Italy., Goeman F; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Giuliani E; Scientific Direction, IRCCS San Gallicano Dermatological Institute, Rome, Italy., Sperandio E; Biostatistics, Bioinformatics and Clinical Trial Center, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Piaggio G; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Morrone A; Scientific Direction, IRCCS San Gallicano Dermatological Institute, Rome, Italy., Ciliberto G; Scientific Direction, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Fanciulli M; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Blandino G; Oncogenomics and Epigenetics, IRCCS Regina Elena National Cancer Institute, Rome, Italy., Pimpinelli F; Microbiology and Virology Unit, IRCCS San Gallicano Dermatological Institute, Rome, Italy., Pallocca M; Biostatistics, Bioinformatics and Clinical Trial Center, IRCCS Regina Elena National Cancer Institute, Rome, Italy.
Corporate Authors: ISG COVID Team
Source: Computational and structural biotechnology journal [Comput Struct Biotechnol J] 2022; Vol. 20, pp. 2558-2563. Date of Electronic Publication: 2022 May 19.
Publication Type: Journal Article
Journal Info: Publisher: Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology Country of Publication: Netherlands NLM ID: 101585369 Publication Model: Print-Electronic Cited Medium: Print ISSN: 2001-0370 (Print) Linking ISSN: 20010370 NLM ISO Abbreviation: Comput Struct Biotechnol J Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: Optimizing the Illumina COVIDSeq laboratorial and bioinformatics pipeline on thousands of samples for SARS-CoV-2 Variants of Concern tracking.
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  Data: <searchLink fieldCode="AU" term="%22Donzelli+S%22">Donzelli S</searchLink>; Oncogenomics and Epigenetics, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Ciuffreda+L%22">Ciuffreda L</searchLink>; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Pontone+M%22">Pontone M</searchLink>; Microbiology and Virology Unit, IRCCS San Gallicano Dermatological Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Betti+M%22">Betti M</searchLink>; Biostatistics, Bioinformatics and Clinical Trial Center, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Massacci+A%22">Massacci A</searchLink>; Biostatistics, Bioinformatics and Clinical Trial Center, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Mottini+C%22">Mottini C</searchLink>; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22De+Nicola+F%22">De Nicola F</searchLink>; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Orlandi+G%22">Orlandi G</searchLink>; Scientific Direction, IRCCS San Gallicano Dermatological Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Goeman+F%22">Goeman F</searchLink>; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Giuliani+E%22">Giuliani E</searchLink>; Scientific Direction, IRCCS San Gallicano Dermatological Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Sperandio+E%22">Sperandio E</searchLink>; Biostatistics, Bioinformatics and Clinical Trial Center, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Piaggio+G%22">Piaggio G</searchLink>; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Morrone+A%22">Morrone A</searchLink>; Scientific Direction, IRCCS San Gallicano Dermatological Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Ciliberto+G%22">Ciliberto G</searchLink>; Scientific Direction, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Fanciulli+M%22">Fanciulli M</searchLink>; SAFU Unit, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Blandino+G%22">Blandino G</searchLink>; Oncogenomics and Epigenetics, IRCCS Regina Elena National Cancer Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Pimpinelli+F%22">Pimpinelli F</searchLink>; Microbiology and Virology Unit, IRCCS San Gallicano Dermatological Institute, Rome, Italy.<br /><searchLink fieldCode="AU" term="%22Pallocca+M%22">Pallocca M</searchLink>; Biostatistics, Bioinformatics and Clinical Trial Center, IRCCS Regina Elena National Cancer Institute, Rome, Italy.
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