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Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.

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Title: Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Authors: Chaguza C; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Hahn AM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, Australia., Zhou S; Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC, USA.; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA., Ferguson D; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Pham K; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Peña-Hernández MA; Department of Biological and Biomedical Sciences, Yale School of Medicine, New Haven, Connecticut, USA., Castaldi C; Yale Center for Genome Analysis, Yale University, New Haven, CT, USA., Hill V; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Schulz W; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA., Swanstrom RI; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA., Roberts SC; Infectious Disease, Yale School of Medicine, New Haven, CT, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.
Corporate Authors: Yale SARS-CoV-2 Genomic Surveillance Initiative
Source: MedRxiv : the preprint server for health sciences [medRxiv] 2022 Jul 02. Date of Electronic Publication: 2022 Jul 02.
Publication Type: Preprint; Journal Article
Journal Info: Country of Publication: United States NLM ID: 101767986 Publication Model: Electronic Cited Medium: Internet NLM ISO Abbreviation: medRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: <searchLink fieldCode="AU" term="%22Chaguza+C%22">Chaguza C</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Hahn+AM%22">Hahn AM</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Petrone+ME%22">Petrone ME</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Zhou+S%22">Zhou S</searchLink>; Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC, USA.; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.<br /><searchLink fieldCode="AU" term="%22Ferguson+D%22">Ferguson D</searchLink>; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Breban+MI%22">Breban MI</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Pham+K%22">Pham K</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Peña-Hernández+MA%22">Peña-Hernández MA</searchLink>; Department of Biological and Biomedical Sciences, Yale School of Medicine, New Haven, Connecticut, USA.<br /><searchLink fieldCode="AU" term="%22Castaldi+C%22">Castaldi C</searchLink>; Yale Center for Genome Analysis, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Hill+V%22">Hill V</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Schulz+W%22">Schulz W</searchLink>; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Swanstrom+RI%22">Swanstrom RI</searchLink>; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.<br /><searchLink fieldCode="AU" term="%22Roberts+SC%22">Roberts SC</searchLink>; Infectious Disease, Yale School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Grubaugh+ND%22">Grubaugh ND</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA.
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  Data: <i>Country of Publication: </i>United States <i>NLM ID: </i>101767986 <i>Publication Model: </i>Electronic <i>Cited Medium: </i>Internet <i>NLM ISO Abbreviation: </i>medRxiv <i>Subsets: </i>PubMed not MEDLINE
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        Value: 10.1101/2022.06.29.22276868
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              Text: 2022 Jul 02
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