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Context-specific emergence and growth of the SARS-CoV-2 Delta variant.

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Title: Context-specific emergence and growth of the SARS-CoV-2 Delta variant.
Authors: McCrone JT; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK., Hill V; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK., Bajaj S; Department of Zoology, University of Oxford, Oxford, UK., Pena RE; Department of Zoology, University of Oxford, Oxford, UK., Lambert BC; College of Engineering, Mathematics and Physical Sciences, University of Exeter, Exeter, UK., Inward R; Department of Zoology, University of Oxford, Oxford, UK.; MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK., Bhatt S; MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK.; Section of Epidemiology, Department of Public Health, University of Copenhagen, Copenhagen, Denmark., Volz E; MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK., Ruis C; Molecular Immunity Unit, Department of Medicine, Cambridge University, Cambridge, UK., Dellicour S; Spatial Epidemiology Lab (SpELL), Université Libre de Bruxelles, Bruxelles, Belgium.; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium., Baele G; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium., Zarebski AE; Department of Zoology, University of Oxford, Oxford, UK., Sadilek A; Google, Mountain View, CA, USA., Wu N; Google, Mountain View, CA, USA., Schneider A; Google, Mountain View, CA, USA., Ji X; Department of Mathematics, School of Science and Engineering, Tulane University, New Orleans, LA, USA., Raghwani J; Department of Zoology, University of Oxford, Oxford, UK., Jackson B; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK., Colquhoun R; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK., O'Toole Á; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK., Peacock TP; Department of Infectious Disease, Imperial College London, London, UK.; UK Health Security Agency, London, UK., Twohig K; UK Health Security Agency, London, UK., Thelwall S; UK Health Security Agency, London, UK., Dabrera G; UK Health Security Agency, London, UK., Myers R; UK Health Security Agency, London, UK., Faria NR; Department of Zoology, University of Oxford, Oxford, UK.; MRC Centre of Global Infectious Disease Analysis, Jameel Institute for Disease and Emergency Analytics, Imperial College London, London, UK.; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de Sao Paulo, Sao Paulo, Brazil., Huber C; BlueDot, Toronto, Ontario, Canada., Bogoch II; Divisions of Internal Medicine and Infectious Diseases, Toronto General Hospital, University Health Network, Toronto, Ontario, Canada.; Department of Medicine, Division of Infectious Diseases, University of Toronto, Toronto, Ontario, Canada., Khan K; BlueDot, Toronto, Ontario, Canada.; Department of Medicine, Division of Infectious Diseases, University of Toronto, Toronto, Ontario, Canada.; Li Ka Shing Knowledge Institute, St Michael's Hospital, Toronto, Ontario, Canada., du Plessis L; Department of Zoology, University of Oxford, Oxford, UK.; Department of Biosystems Science and Engineering, ETH Zurich, Zurich, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Barrett JC; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, UK., Aanensen DM; Centre for Genomic Pathogen Surveillance, Big Data Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK., Barclay WS; Department of Infectious Disease, Imperial College London, London, UK., Chand M; UK Health Security Agency, London, UK., Connor T; Pathogen Genomics Unit, Public Health Wales NHS Trust, Cardiff, UK.; School of Biosciences, The Sir Martin Evans Building, Cardiff University, Cardiff, UK.; Quadram Institute, Norwich, UK., Loman NJ; Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK., Suchard MA; Departments of Biostatistics, Biomathematics and Human Genetics, University of California, Los Angeles, Los Angeles, CA, USA., Pybus OG; Department of Zoology, University of Oxford, Oxford, UK. opybus@rvc.ac.uk.; Department of Pathobiology and Population Sciences, Royal Veterinary College London, London, UK. opybus@rvc.ac.uk.; Pandemic Sciences Institute, University of Oxford, Oxford, UK. opybus@rvc.ac.uk., Rambaut A; Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK. a.rambaut@ed.ac.uk., Kraemer MUG; Department of Zoology, University of Oxford, Oxford, UK. moritz.kraemer@biology.ox.ac.uk.; Pandemic Sciences Institute, University of Oxford, Oxford, UK. moritz.kraemer@biology.ox.ac.uk.
Corporate Authors: COVID-19 Genomics UK (COG-UK) Consortium
Source: Nature [Nature] 2022 Oct; Vol. 610 (7930), pp. 154-160. Date of Electronic Publication: 2022 Aug 11.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE
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