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An intensity-based post-processing tool for 3D instance segmentation of organelles in soft X-ray tomograms.

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Title: An intensity-based post-processing tool for 3D instance segmentation of organelles in soft X-ray tomograms.
Authors: Li A; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.; University of Chinese Academy of Sciences, Beijing, China., Zhang S; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.; University of Chinese Academy of Sciences, Beijing, China., Loconte V; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China., Liu Y; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China., Ekman A; Department of Anatomy, University of California San Francisco, San Francisco, CA, United States of America.; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States of America., Thompson GJ; iHuman Institute, ShanghaiTech University, Shanghai, China., Sali A; California Institute for Quantitative Biosciences, Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, United States of America., Stevens RC; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.; Department of Biological Sciences, Bridge Institute, University of Southern California, Los Angeles, CA, United States of America.; Department of Chemistry, Bridge Institute, University of Southern California, Los Angeles, CA, United States of America., White K; Department of Chemistry, Bridge Institute, University of Southern California, Los Angeles, CA, United States of America., Singla J; Department of Biosciences and Bioengineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, India., Sun L; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
Source: PloS one [PLoS One] 2022 Sep 01; Vol. 17 (9), pp. e0269887. Date of Electronic Publication: 2022 Sep 01 (Print Publication: 2022).
Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Public Library of Science Country of Publication: United States NLM ID: 101285081 Publication Model: eCollection Cited Medium: Internet ISSN: 1932-6203 (Electronic) Linking ISSN: 19326203 NLM ISO Abbreviation: PLoS One Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: An intensity-based post-processing tool for 3D instance segmentation of organelles in soft X-ray tomograms.
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  Data: <searchLink fieldCode="AU" term="%22Li+A%22">Li A</searchLink>; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.; University of Chinese Academy of Sciences, Beijing, China.<br /><searchLink fieldCode="AU" term="%22Zhang+S%22">Zhang S</searchLink>; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.; University of Chinese Academy of Sciences, Beijing, China.<br /><searchLink fieldCode="AU" term="%22Loconte+V%22">Loconte V</searchLink>; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.<br /><searchLink fieldCode="AU" term="%22Liu+Y%22">Liu Y</searchLink>; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.<br /><searchLink fieldCode="AU" term="%22Ekman+A%22">Ekman A</searchLink>; Department of Anatomy, University of California San Francisco, San Francisco, CA, United States of America.; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, United States of America.<br /><searchLink fieldCode="AU" term="%22Thompson+GJ%22">Thompson GJ</searchLink>; iHuman Institute, ShanghaiTech University, Shanghai, China.<br /><searchLink fieldCode="AU" term="%22Sali+A%22">Sali A</searchLink>; California Institute for Quantitative Biosciences, Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, CA, United States of America.<br /><searchLink fieldCode="AU" term="%22Stevens+RC%22">Stevens RC</searchLink>; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.; Department of Biological Sciences, Bridge Institute, University of Southern California, Los Angeles, CA, United States of America.; Department of Chemistry, Bridge Institute, University of Southern California, Los Angeles, CA, United States of America.<br /><searchLink fieldCode="AU" term="%22White+K%22">White K</searchLink>; Department of Chemistry, Bridge Institute, University of Southern California, Los Angeles, CA, United States of America.<br /><searchLink fieldCode="AU" term="%22Singla+J%22">Singla J</searchLink>; Department of Biosciences and Bioengineering, Indian Institute of Technology Roorkee, Roorkee, Uttarakhand, India.<br /><searchLink fieldCode="AU" term="%22Sun+L%22">Sun L</searchLink>; iHuman Institute, ShanghaiTech University, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.
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  Data: <searchLink fieldCode="JN" term="%22101285081%22">PloS one</searchLink> [PLoS One] 2022 Sep 01; Vol. 17 (9), pp. e0269887. <i>Date of Electronic Publication: </i>2022 Sep 01 (<i>Print Publication: </i>2022).
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