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Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.

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Title: Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.
Authors: Liu Y; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Bhagwate A; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Winham SJ; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Stephens MT; Genomics and Bioinformatics Core Facility, 019 Galvin Life Sciences Center, University of Notre Dame, Notre Dame, IN, 46556, USA., Harker BW; Genomics and Bioinformatics Core Facility, 019 Galvin Life Sciences Center, University of Notre Dame, Notre Dame, IN, 46556, USA., McDonough SJ; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Stallings-Mann ML; Department of Neuroscience, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL, 32224, USA., Heinzen EP; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Vierkant RA; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Hoskin TL; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Frost MH; Department of Medical Oncology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Carter JM; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Pfrender ME; Department of Biological Sciences, 109B Galvin Life Science Center, University of Notre Dame, Notre Dame, IN, 46556, USA., Littlepage L; Department of Chemistry and Biochemistry, Harper Cancer Research Center, University of Notre Dame, Notre Dame, IN, 46556, USA., Radisky DC; Department of Cancer Biology, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL, 32224, USA., Cunningham JM; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Degnim AC; Department of Surgery, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Wang C; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA. wang.chen@mayo.edu.
Source: BMC medical genomics [BMC Med Genomics] 2022 Sep 16; Vol. 15 (1), pp. 195. Date of Electronic Publication: 2022 Sep 16.
Publication Type: Journal Article; Research Support, N.I.H., Extramural
Journal Info: Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium: Internet ISSN: 1755-8794 (Electronic) Linking ISSN: 17558794 NLM ISO Abbreviation: BMC Med Genomics Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.
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  Data: <searchLink fieldCode="AU" term="%22Liu+Y%22">Liu Y</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Bhagwate+A%22">Bhagwate A</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Winham+SJ%22">Winham SJ</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Stephens+MT%22">Stephens MT</searchLink>; Genomics and Bioinformatics Core Facility, 019 Galvin Life Sciences Center, University of Notre Dame, Notre Dame, IN, 46556, USA.<br /><searchLink fieldCode="AU" term="%22Harker+BW%22">Harker BW</searchLink>; Genomics and Bioinformatics Core Facility, 019 Galvin Life Sciences Center, University of Notre Dame, Notre Dame, IN, 46556, USA.<br /><searchLink fieldCode="AU" term="%22McDonough+SJ%22">McDonough SJ</searchLink>; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Stallings-Mann+ML%22">Stallings-Mann ML</searchLink>; Department of Neuroscience, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL, 32224, USA.<br /><searchLink fieldCode="AU" term="%22Heinzen+EP%22">Heinzen EP</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Vierkant+RA%22">Vierkant RA</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Hoskin+TL%22">Hoskin TL</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Frost+MH%22">Frost MH</searchLink>; Department of Medical Oncology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Carter+JM%22">Carter JM</searchLink>; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Pfrender+ME%22">Pfrender ME</searchLink>; Department of Biological Sciences, 109B Galvin Life Science Center, University of Notre Dame, Notre Dame, IN, 46556, USA.<br /><searchLink fieldCode="AU" term="%22Littlepage+L%22">Littlepage L</searchLink>; Department of Chemistry and Biochemistry, Harper Cancer Research Center, University of Notre Dame, Notre Dame, IN, 46556, USA.<br /><searchLink fieldCode="AU" term="%22Radisky+DC%22">Radisky DC</searchLink>; Department of Cancer Biology, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL, 32224, USA.<br /><searchLink fieldCode="AU" term="%22Cunningham+JM%22">Cunningham JM</searchLink>; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Degnim+AC%22">Degnim AC</searchLink>; Department of Surgery, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA.<br /><searchLink fieldCode="AU" term="%22Wang+C%22">Wang C</searchLink>; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA. wang.chen@mayo.edu.
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  Data: <searchLink fieldCode="JN" term="%22101319628%22">BMC medical genomics</searchLink> [BMC Med Genomics] 2022 Sep 16; Vol. 15 (1), pp. 195. <i>Date of Electronic Publication: </i>2022 Sep 16.
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