Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics.
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| Title: | Quality control recommendations for RNASeq using FFPE samples based on pre-sequencing lab metrics and post-sequencing bioinformatics metrics. |
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| Authors: | Liu Y; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Bhagwate A; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Winham SJ; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Stephens MT; Genomics and Bioinformatics Core Facility, 019 Galvin Life Sciences Center, University of Notre Dame, Notre Dame, IN, 46556, USA., Harker BW; Genomics and Bioinformatics Core Facility, 019 Galvin Life Sciences Center, University of Notre Dame, Notre Dame, IN, 46556, USA., McDonough SJ; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Stallings-Mann ML; Department of Neuroscience, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL, 32224, USA., Heinzen EP; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Vierkant RA; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Hoskin TL; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Frost MH; Department of Medical Oncology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Carter JM; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Pfrender ME; Department of Biological Sciences, 109B Galvin Life Science Center, University of Notre Dame, Notre Dame, IN, 46556, USA., Littlepage L; Department of Chemistry and Biochemistry, Harper Cancer Research Center, University of Notre Dame, Notre Dame, IN, 46556, USA., Radisky DC; Department of Cancer Biology, Mayo Clinic, 4500 San Pablo Road, Jacksonville, FL, 32224, USA., Cunningham JM; Department of Laboratory Medicine and Pathology, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Degnim AC; Department of Surgery, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA., Wang C; Department of Quantitative Health Sciences, Mayo Clinic, 200 1st Street SW, Rochester, MN, 55905, USA. wang.chen@mayo.edu. |
| Source: | BMC medical genomics [BMC Med Genomics] 2022 Sep 16; Vol. 15 (1), pp. 195. Date of Electronic Publication: 2022 Sep 16. |
| Publication Type: | Journal Article; Research Support, N.I.H., Extramural |
| Journal Info: | Publisher: BioMed Central Country of Publication: England NLM ID: 101319628 Publication Model: Electronic Cited Medium: Internet ISSN: 1755-8794 (Electronic) Linking ISSN: 17558794 NLM ISO Abbreviation: BMC Med Genomics Subsets: MEDLINE |
| Database: | MEDLINE Ultimate |
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