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Global disparities in SARS-CoV-2 genomic surveillance.

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Title: Global disparities in SARS-CoV-2 genomic surveillance.
Authors: Brito AF; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. andersonfbrito@gmail.com.; Instituto Todos pela Saúde, São Paulo, SP, Brazil. andersonfbrito@gmail.com., Semenova E; Department of Computer Science, University of Oxford, Oxford, UK., Dudas G; Institute of Biotechnology, Life Sciences Center, Vilnius University, Vilnius, Lithuania., Hassler GW; Department of Computational Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA., Kalinich CC; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Yale School of Medicine, Yale University, New Haven, CT, USA., Kraemer MUG; Department of Biology, University of Oxford, Oxford, UK., Ho J; GISAID Global Data Science Initiative, Munich, Germany.; Bioinformatics Institute & ID Labs, Agency for Science Technology and Research, Singapore, Singapore., Tegally H; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa., Githinji G; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; Department of Biochemistry and Biotechnology, Pwani University, Kilifi, Kenya., Agoti CN; KEMRI-Wellcome Trust Research Programme, Kilifi, Kenya.; School of Health and Human Sciences, Pwani University, Kilifi, Kenya., Matkin LE; Department of Biology, University of Oxford, Oxford, UK., Whittaker C; MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, UK.; The Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK., Howden BP; Microbiological Diagnostic Unit Public Health Laboratory, Department of Microbiology and Immunology, The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, Australia., Sintchenko V; Sydney Institute for Infectious Diseases, The University of Sydney, Sydney, NSW, Australia.; Institute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, NSW, Australia., Zuckerman NS; Central Virology Laboratory, Israel Ministry of Health, Sheba Medical Center, Ramat Gan, Israel., Mor O; Central Virology Laboratory, Israel Ministry of Health, Sheba Medical Center, Ramat Gan, Israel., Blankenship HM; Michigan Department of Health and Human Services, Bureau of Laboratories, Lansing, MI, USA., de Oliveira T; KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, University of KwaZulu-Natal, Durban, South Africa.; Centre for Epidemic Response and Innovation (CERI), School of Data Science and Computational Thinking, Stellenbosch University, Stellenbosch, South Africa.; Centre for the AIDS Programme of Research in South Africa (CAPRISA), Durban, South Africa.; Department of Global Health, University of Washington, Seattle, WA, USA., Lin RTP; National Centre for Infectious Diseases, Singapore, Singapore., Siqueira MM; Laboratory of Respiratory Viruses and Measles, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil., Resende PC; Laboratory of Respiratory Viruses and Measles, Instituto Oswaldo Cruz, FIOCRUZ, Rio de Janeiro, Brazil., Vasconcelos ATR; Laboratório de Bioinformática, Laboratório Nacional de Computação Científica, Petrópolis, Brazil., Spilki FR; Feevale University, Institute of Health Sciences, Novo Hamburgo, RS, Brazil., Aguiar RS; Laboratório de Biologia Integrativa, Departamento de Genética, Ecologia e Evolução, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil.; Instituto D'Or de Pesquisa e Ensino (IDOR), Rio de Janeiro, Brazil., Alexiev I; National Center of Infectious and Parasitic Diseases, Sofia, Bulgaria., Ivanov IN; National Center of Infectious and Parasitic Diseases, Sofia, Bulgaria., Philipova I; National Center of Infectious and Parasitic Diseases, Sofia, Bulgaria., Carrington CVF; Department of Preclinical Sciences, Faculty of Medical Sciences, The University of the West Indies, St. Augustine, Trinidad and Tobago., Sahadeo NSD; Department of Preclinical Sciences, Faculty of Medical Sciences, The University of the West Indies, St. Augustine, Trinidad and Tobago., Branda B; GISAID Global Data Science Initiative, Munich, Germany., Gurry C; GISAID Global Data Science Initiative, Munich, Germany., Maurer-Stroh S; GISAID Global Data Science Initiative, Munich, Germany.; Bioinformatics Institute & ID Labs, Agency for Science Technology and Research, Singapore, Singapore.; National Centre for Infectious Diseases, Singapore, Singapore., Naidoo D; Health Emergencies Programme, World Health Organization Regional Office for South-East Asia, New Delhi, India., von Eije KJ; Department of Medical Microbiology and Infection Prevention, Division of Clinical Virology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands.; Emerging Diseases and Zoonoses Unit, Health Emergencies Programme, World Health Organization, Geneva, Switzerland., Perkins MD; Emerging Diseases and Zoonoses Unit, Health Emergencies Programme, World Health Organization, Geneva, Switzerland., van Kerkhove M; Emerging Diseases and Zoonoses Unit, Health Emergencies Programme, World Health Organization, Geneva, Switzerland., Hill SC; Royal Veterinary College, Hawkshead, UK., Sabino EC; Instituto Todos pela Saúde, São Paulo, SP, Brazil.; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil., Pybus OG; Department of Biology, University of Oxford, Oxford, UK.; Royal Veterinary College, Hawkshead, UK., Dye C; Department of Biology, University of Oxford, Oxford, UK., Bhatt S; MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, UK.; The Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK.; Section of Epidemiology, Department of Public Health, University of Copenhagen, Copenhagen, Denmark., Flaxman S; Department of Computer Science, University of Oxford, Oxford, UK., Suchard MA; Department of Computational Medicine, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA.; Department of Biostatistics, Fielding School of Public Health, University of California Los Angeles, Los Angeles, CA, USA.; Department of Human Genetics, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA., Baele G; Department of Microbiology, Immunology and Transplantation, Rega Institute, KU Leuven, Leuven, Belgium., Faria NR; Department of Biology, University of Oxford, Oxford, UK. nfaria@ic.ac.uk.; MRC Centre for Global Infectious Disease Analysis, School of Public Health, Imperial College London, London, UK. nfaria@ic.ac.uk.; The Abdul Latif Jameel Institute for Disease and Emergency Analytics (J-IDEA), School of Public Health, Imperial College London, London, UK. nfaria@ic.ac.uk.; Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil. nfaria@ic.ac.uk.
Corporate Authors: Bulgarian SARS-CoV-2 sequencing group, Communicable Diseases Genomics Network (Australia and New Zealand), COVID-19 Impact Project, Danish Covid-19 Genome Consortium, Fiocruz COVID-19 Genomic Surveillance Network, GISAID core curation team, Network for Genomic Surveillance in South Africa (NGS-SA), Swiss SARS-CoV-2 Sequencing Consortium
Source: Nature communications [Nat Commun] 2022 Nov 16; Vol. 13 (1), pp. 7003. Date of Electronic Publication: 2022 Nov 16.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
Database: MEDLINE Ultimate
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            NameFull: Suchard MA
      – PersonEntity:
          Name:
            NameFull: Grubaugh ND
      – PersonEntity:
          Name:
            NameFull: Baele G
      – PersonEntity:
          Name:
            NameFull: Faria NR
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 16
              M: 11
              Text: 2022 Nov 16
              Type: published
              Y: 2022
          Identifiers:
            – Type: issn-electronic
              Value: 2041-1723
          Numbering:
            – Type: volume
              Value: 13
            – Type: issue
              Value: 1
          Titles:
            – TitleFull: Nature communications
              Type: main
ResultId 1