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The Delta variant wave in Tunisia: Genetic diversity, spatio-temporal distribution and evidence of the spread of a divergent AY.122 sub-lineage.

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Title: The Delta variant wave in Tunisia: Genetic diversity, spatio-temporal distribution and evidence of the spread of a divergent AY.122 sub-lineage.
Authors: Haddad-Boubaker S; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia., Arbi M; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Bioinformatics, Biomathematics and Biostatistics, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia., Souiai O; Laboratory of Bioinformatics, Biomathematics and Biostatistics, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia., Chouikha A; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia., Fares W; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia., Edington K; New Variant Assessment Platform (NVAP), UK Health Security Agency, London, United Kingdom., Sims S; New Variant Assessment Platform (NVAP), UK Health Security Agency, London, United Kingdom., Camma C; Department of Virology, Instituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale (IZSAM), Teramo, Italy., Lorusso A; Department of Virology, Instituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale (IZSAM), Teramo, Italy., Diagne MM; Department of Virology, Pasteur Institute of Dakar, Dakar, Senegal., Diallo A; Department of Virology, Pasteur Institute of Dakar, Dakar, Senegal., Boubaker IBB; Laboratory of Microbiology, Charles Nicolle Hospital, Tunis, Tunisia.; Laboratory Research Antimicrobial Resistance, Faculty of Medicine of Tunis, University of Tunis El-Manar, Tunis, Tunisia., Ferjani S; Laboratory of Microbiology, Charles Nicolle Hospital, Tunis, Tunisia.; Laboratory Research Antimicrobial Resistance, Faculty of Medicine of Tunis, University of Tunis El-Manar, Tunis, Tunisia., Mastouri M; Laboratory of Microbiology, Fattouma Bourguiba Hospital, Monastir, Tunisia.; Laboratory Research Laboratoire des Maladies Transmissibles et Substances Biologiquement Actives, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia., Mhalla S; Laboratory of Microbiology, Fattouma Bourguiba Hospital, Monastir, Tunisia.; Laboratory Research Laboratoire des Maladies Transmissibles et Substances Biologiquement Actives, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia., Karray H; Laboratory of Microbiology, Habib Bourguiba Hospital, Sfax, Tunisia., Gargouri S; Laboratory of Microbiology, Habib Bourguiba Hospital, Sfax, Tunisia., Bahri O; Laboratory of Microbiology and Biochemistry, Aziza Othmana Hospital, Tunis, Tunisia., Trabelsi A; Laboratory of Virology, Sahloul Hospital of Sousse, Sousse, Tunisia., Kallala O; Laboratory of Virology, Sahloul Hospital of Sousse, Sousse, Tunisia., Hannachi N; Laboratory of Microbiology, Farhat Hached Hospital of Sousse, Sousse, Tunisia., Chaabouni Y; Laboratory of Medical Biology, Ibn El Jazzar Hospital, Kairouan, Tunisia.; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia., Smaoui H; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; Laboratory of Microbiology, Microbiology of Children and Immunocompromised, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; Laboratory of Microbiology, Bechir Hamza Children's Hospital, Tunis, Tunisia., Meftah K; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; Laboratory of Microbiology, Microbiology of Children and Immunocompromised, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; Laboratory of Microbiology, Bechir Hamza Children's Hospital, Tunis, Tunisia., Bouhalila SB; Laboratory of Medical Biology and Blood Bank, Institute Mohamed Kassab d'orthopédie, Manouba, Tunisia., Foughali S; Laboratory of Medical Biology, Menzel Bourguiba Hospital, Bizerte, Tunisia., Zribi M; Laboratory of Microbiology, La Rabta Hospital, Tunis, Tunisia., Lamari A; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia., Touzi H; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia., Safer M; National Observatory of New and Emergent Diseases, Tunis, Tunisia., Alaya NB; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; National Observatory of New and Emergent Diseases, Tunis, Tunisia., Kahla AB; Laboratory of Bioinformatics, Biomathematics and Biostatistics, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia., Gdoura M; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Department of Virology, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia., Triki H; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.
Source: Frontiers in public health [Front Public Health] 2023 Jan 04; Vol. 10, pp. 990832. Date of Electronic Publication: 2023 Jan 04 (Print Publication: 2022).
Publication Type: Journal Article; Research Support, Non-U.S. Gov't
Journal Info: Publisher: Frontiers Editorial Office Country of Publication: Switzerland NLM ID: 101616579 Publication Model: eCollection Cited Medium: Internet ISSN: 2296-2565 (Electronic) Linking ISSN: 22962565 NLM ISO Abbreviation: Front Public Health Subsets: MEDLINE
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  Data: The Delta variant wave in Tunisia: Genetic diversity, spatio-temporal distribution and evidence of the spread of a divergent AY.122 sub-lineage.
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  Data: <searchLink fieldCode="AU" term="%22Haddad-Boubaker+S%22">Haddad-Boubaker S</searchLink>; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Arbi+M%22">Arbi M</searchLink>; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Bioinformatics, Biomathematics and Biostatistics, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Souiai+O%22">Souiai O</searchLink>; Laboratory of Bioinformatics, Biomathematics and Biostatistics, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Chouikha+A%22">Chouikha A</searchLink>; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Fares+W%22">Fares W</searchLink>; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Edington+K%22">Edington K</searchLink>; New Variant Assessment Platform (NVAP), UK Health Security Agency, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Sims+S%22">Sims S</searchLink>; New Variant Assessment Platform (NVAP), UK Health Security Agency, London, United Kingdom.<br /><searchLink fieldCode="AU" term="%22Camma+C%22">Camma C</searchLink>; Department of Virology, Instituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale (IZSAM), Teramo, Italy.<br /><searchLink fieldCode="AU" term="%22Lorusso+A%22">Lorusso A</searchLink>; Department of Virology, Instituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise G. Caporale (IZSAM), Teramo, Italy.<br /><searchLink fieldCode="AU" term="%22Diagne+MM%22">Diagne MM</searchLink>; Department of Virology, Pasteur Institute of Dakar, Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Diallo+A%22">Diallo A</searchLink>; Department of Virology, Pasteur Institute of Dakar, Dakar, Senegal.<br /><searchLink fieldCode="AU" term="%22Boubaker+IBB%22">Boubaker IBB</searchLink>; Laboratory of Microbiology, Charles Nicolle Hospital, Tunis, Tunisia.; Laboratory Research Antimicrobial Resistance, Faculty of Medicine of Tunis, University of Tunis El-Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Ferjani+S%22">Ferjani S</searchLink>; Laboratory of Microbiology, Charles Nicolle Hospital, Tunis, Tunisia.; Laboratory Research Antimicrobial Resistance, Faculty of Medicine of Tunis, University of Tunis El-Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Mastouri+M%22">Mastouri M</searchLink>; Laboratory of Microbiology, Fattouma Bourguiba Hospital, Monastir, Tunisia.; Laboratory Research Laboratoire des Maladies Transmissibles et Substances Biologiquement Actives, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia.<br /><searchLink fieldCode="AU" term="%22Mhalla+S%22">Mhalla S</searchLink>; Laboratory of Microbiology, Fattouma Bourguiba Hospital, Monastir, Tunisia.; Laboratory Research Laboratoire des Maladies Transmissibles et Substances Biologiquement Actives, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia.<br /><searchLink fieldCode="AU" term="%22Karray+H%22">Karray H</searchLink>; Laboratory of Microbiology, Habib Bourguiba Hospital, Sfax, Tunisia.<br /><searchLink fieldCode="AU" term="%22Gargouri+S%22">Gargouri S</searchLink>; Laboratory of Microbiology, Habib Bourguiba Hospital, Sfax, Tunisia.<br /><searchLink fieldCode="AU" term="%22Bahri+O%22">Bahri O</searchLink>; Laboratory of Microbiology and Biochemistry, Aziza Othmana Hospital, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Trabelsi+A%22">Trabelsi A</searchLink>; Laboratory of Virology, Sahloul Hospital of Sousse, Sousse, Tunisia.<br /><searchLink fieldCode="AU" term="%22Kallala+O%22">Kallala O</searchLink>; Laboratory of Virology, Sahloul Hospital of Sousse, Sousse, Tunisia.<br /><searchLink fieldCode="AU" term="%22Hannachi+N%22">Hannachi N</searchLink>; Laboratory of Microbiology, Farhat Hached Hospital of Sousse, Sousse, Tunisia.<br /><searchLink fieldCode="AU" term="%22Chaabouni+Y%22">Chaabouni Y</searchLink>; Laboratory of Medical Biology, Ibn El Jazzar Hospital, Kairouan, Tunisia.; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Smaoui+H%22">Smaoui H</searchLink>; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; Laboratory of Microbiology, Microbiology of Children and Immunocompromised, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; Laboratory of Microbiology, Bechir Hamza Children's Hospital, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Meftah+K%22">Meftah K</searchLink>; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; Laboratory of Microbiology, Microbiology of Children and Immunocompromised, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; Laboratory of Microbiology, Bechir Hamza Children's Hospital, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Bouhalila+SB%22">Bouhalila SB</searchLink>; Laboratory of Medical Biology and Blood Bank, Institute Mohamed Kassab d'orthopédie, Manouba, Tunisia.<br /><searchLink fieldCode="AU" term="%22Foughali+S%22">Foughali S</searchLink>; Laboratory of Medical Biology, Menzel Bourguiba Hospital, Bizerte, Tunisia.<br /><searchLink fieldCode="AU" term="%22Zribi+M%22">Zribi M</searchLink>; Laboratory of Microbiology, La Rabta Hospital, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Lamari+A%22">Lamari A</searchLink>; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Touzi+H%22">Touzi H</searchLink>; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Safer+M%22">Safer M</searchLink>; National Observatory of New and Emergent Diseases, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Alaya+NB%22">Alaya NB</searchLink>; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.; National Observatory of New and Emergent Diseases, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Kahla+AB%22">Kahla AB</searchLink>; Laboratory of Bioinformatics, Biomathematics and Biostatistics, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.<br /><searchLink fieldCode="AU" term="%22Gdoura+M%22">Gdoura M</searchLink>; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Department of Virology, Faculty of Pharmacy of Monastir, University of Monastir, Monastir, Tunisia.<br /><searchLink fieldCode="AU" term="%22Triki+H%22">Triki H</searchLink>; Laboratory of Clinical Virology, WHO Regional Reference Laboratory for Poliomyelitis and Measles for the EMR, Institute Pasteur de Tunis, University of Tunis El-Manar, Tunis, Tunisia.; Laboratory of Viruses, Hosts and Vectors, Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Clinical Investigation Center (CIC), Institute Pasteur de Tunis, University of Tunis El Manar, Tunis, Tunisia.; Department of Microbiology, Faculty of Medicine of Tunis, University of Tunis El Manar, Tunis, Tunisia.
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