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Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.

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Title: Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Authors: Chaguza C; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Electronic address: chrispin.chaguza@yale.edu., Hahn AM; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Petrone ME; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA; School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, Australia., Zhou S; Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC, USA; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Ferguson D; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA., Breban MI; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Pham K; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Peña-Hernández MA; Department of Biological and Biomedical Sciences, Yale School of Medicine, New Haven, CT, USA., Castaldi C; Yale Center for Genome Analysis, Yale University, New Haven, CT, USA., Hill V; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA., Schulz W; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA., Swanstrom RI; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA., Roberts SC; Infectious Disease, Yale School of Medicine, New Haven, CT, USA., Grubaugh ND; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA. Electronic address: nathan.grubaugh@yale.edu.
Corporate Authors: Yale SARS-CoV-2 Genomic Surveillance Initiative
Source: Cell reports. Medicine [Cell Rep Med] 2023 Feb 21; Vol. 4 (2), pp. 100943. Date of Electronic Publication: 2023 Jan 27.
Publication Type: Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
Journal Info: Publisher: Cell Press Country of Publication: United States NLM ID: 101766894 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 2666-3791 (Electronic) Linking ISSN: 26663791 NLM ISO Abbreviation: Cell Rep Med Subsets: MEDLINE
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  Data: <searchLink fieldCode="AU" term="%22Chaguza+C%22">Chaguza C</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Electronic address: chrispin.chaguza@yale.edu.<br /><searchLink fieldCode="AU" term="%22Hahn+AM%22">Hahn AM</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Petrone+ME%22">Petrone ME</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA; School of Life and Environmental Sciences, University of Sydney, Sydney, NSW, Australia.<br /><searchLink fieldCode="AU" term="%22Zhou+S%22">Zhou S</searchLink>; Department of Microbiology and Immunology, University of North Carolina, Chapel Hill, NC, USA; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.<br /><searchLink fieldCode="AU" term="%22Ferguson+D%22">Ferguson D</searchLink>; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Breban+MI%22">Breban MI</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Pham+K%22">Pham K</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Peña-Hernández+MA%22">Peña-Hernández MA</searchLink>; Department of Biological and Biomedical Sciences, Yale School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Castaldi+C%22">Castaldi C</searchLink>; Yale Center for Genome Analysis, Yale University, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Hill+V%22">Hill V</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Schulz+W%22">Schulz W</searchLink>; Department of Laboratory Medicine, Yale School of Medicine, New Haven, CT, USA; Center for Outcomes Research and Evaluation, Yale New Haven Hospital, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Swanstrom+RI%22">Swanstrom RI</searchLink>; Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA; Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.<br /><searchLink fieldCode="AU" term="%22Roberts+SC%22">Roberts SC</searchLink>; Infectious Disease, Yale School of Medicine, New Haven, CT, USA.<br /><searchLink fieldCode="AU" term="%22Grubaugh+ND%22">Grubaugh ND</searchLink>; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA; Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA. Electronic address: nathan.grubaugh@yale.edu.
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