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Phased nanopore assembly with Shasta and modular graph phasing with GFAse.

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Title: Phased nanopore assembly with Shasta and modular graph phasing with GFAse.
Authors: Lorig-Roach R; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Meredith M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Monlong J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Jain M; Department of Bioengineering, Department of Physics, Northeastern University, Boston, MA, USA., Olsen H; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., McNulty B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Porubsky D; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA., Montague T; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Neuroscience, Columbia University, New York, NY, USA & Howard Hughes Medical Institute, Columbia University, New York, NY, USA., Lucas J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Condon C; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Eizenga J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Juul S; Oxford Nanopore Technologies Inc., McKenzie S; Oxford Nanopore Technologies Inc., Simmonds SE; Chan Zuckerberg Initiative Foundation, Redwood City, CA, USA., Park J; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Asri M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Koren S; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome & Research Institute, National Institutes of Health, Bethesda, MD USA., Eichler E; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA & Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA., Axel R; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Neuroscience, Columbia University, New York, NY, USA & Howard Hughes Medical Institute, Columbia University, New York, NY, USA., Martin B; Chan Zuckerberg Initiative Foundation, Redwood City, CA, USA., Carnevali P; Chan Zuckerberg Initiative Foundation, Redwood City, CA, USA., Miga K; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA., Paten B; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Feb 22. Date of Electronic Publication: 2023 Feb 22.
Publication Type: Preprint; Journal Article
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
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  Data: Phased nanopore assembly with Shasta and modular graph phasing with GFAse.
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  Data: <searchLink fieldCode="AU" term="%22Lorig-Roach+R%22">Lorig-Roach R</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Meredith+M%22">Meredith M</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Monlong+J%22">Monlong J</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Jain+M%22">Jain M</searchLink>; Department of Bioengineering, Department of Physics, Northeastern University, Boston, MA, USA.<br /><searchLink fieldCode="AU" term="%22Olsen+H%22">Olsen H</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22McNulty+B%22">McNulty B</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Porubsky+D%22">Porubsky D</searchLink>; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Montague+T%22">Montague T</searchLink>; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Neuroscience, Columbia University, New York, NY, USA & Howard Hughes Medical Institute, Columbia University, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Lucas+J%22">Lucas J</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Condon+C%22">Condon C</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Eizenga+J%22">Eizenga J</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Juul+S%22">Juul S</searchLink>; Oxford Nanopore Technologies Inc.<br /><searchLink fieldCode="AU" term="%22McKenzie+S%22">McKenzie S</searchLink>; Oxford Nanopore Technologies Inc.<br /><searchLink fieldCode="AU" term="%22Simmonds+SE%22">Simmonds SE</searchLink>; Chan Zuckerberg Initiative Foundation, Redwood City, CA, USA.<br /><searchLink fieldCode="AU" term="%22Park+J%22">Park J</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Asri+M%22">Asri M</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Koren+S%22">Koren S</searchLink>; Genome Informatics Section, Computational and Statistical Genomics Branch, National Human Genome & Research Institute, National Institutes of Health, Bethesda, MD USA.<br /><searchLink fieldCode="AU" term="%22Eichler+E%22">Eichler E</searchLink>; Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, USA & Howard Hughes Medical Institute, University of Washington, Seattle, WA, USA.<br /><searchLink fieldCode="AU" term="%22Axel+R%22">Axel R</searchLink>; The Mortimer B. Zuckerman Mind Brain Behavior Institute, Department of Neuroscience, Columbia University, New York, NY, USA & Howard Hughes Medical Institute, Columbia University, New York, NY, USA.<br /><searchLink fieldCode="AU" term="%22Martin+B%22">Martin B</searchLink>; Chan Zuckerberg Initiative Foundation, Redwood City, CA, USA.<br /><searchLink fieldCode="AU" term="%22Carnevali+P%22">Carnevali P</searchLink>; Chan Zuckerberg Initiative Foundation, Redwood City, CA, USA.<br /><searchLink fieldCode="AU" term="%22Miga+K%22">Miga K</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.<br /><searchLink fieldCode="AU" term="%22Paten+B%22">Paten B</searchLink>; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, Santa Cruz, CA, USA.
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  Data: <searchLink fieldCode="JN" term="%22101680187%22">BioRxiv : the preprint server for biology</searchLink> [bioRxiv] 2023 Feb 22. <i>Date of Electronic Publication: </i>2023 Feb 22.
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