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The ENCODE Uniform Analysis Pipelines.

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Title: The ENCODE Uniform Analysis Pipelines.
Authors: Hitz BC; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Jin-Wook L; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Jolanki O; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Kagda MS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Graham K; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Sud P; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Gabdank I; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Strattan JS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Sloan CA; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Dreszer T; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Rowe LD; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Podduturi NR; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Malladi VS; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Chan ET; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Davidson JM; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Ho M; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Miyasato S; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Simison M; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Tanaka F; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Luo Y; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Whaling I; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Hong EL; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA., Lee BT; Genomics Institute, School of Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA., Sandstrom R; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA., Rynes E; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA., Nelson J; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA., Nishida A; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA., Ingersoll A; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA., Buckley M; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA., Frerker M; Altius Institute for Biomedical Sciences, 2211 Elliott Avenue, 6th Floor, Seattle, WA 98121, USA., Kim DS; Dept. of Genetics, Dept. of Computer Science, Stanford University, 240 Pasteur Drive, Palo Alto, CA 94304, USA., Boley N; Dept. of Genetics, Dept. of Computer Science, Stanford University, 240 Pasteur Drive, Palo Alto, CA 94304, USA., Trout D; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125 USA., Dobin A; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA., Rahmanian S; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., Wyman D; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., Balderrama-Gutierrez G; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., Reese F; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., Durand NC; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA.; Department of Computer Science, Rice University, Houston, TX 77030, USA., Dudchenko O; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Weisz D; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Rao SSP; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Department of Structural Biology, Stanford University School of Medicine, Stanford, CA 94305, USA.; Department of Medicine, University of California San Francisco, San Francisco, CA 94143, USA., Blackburn A; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA., Gkountaroulis D; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA., Sadr M; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Olshansky M; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA., Eliaz Y; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Nguyen D; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Bochkov I; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA., Shamim MS; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA.; Department of Bioengineering, Rice University, Houston, TX 77030, USA.; Medical Scientist Training Program, Baylor College of Medicine, Houston, TX 77030, USA., Mahajan R; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA.; Department of BioSciences, Rice University, Houston, TX 77005, USA., Aiden E; Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.; The Center for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.; Center for Theoretical Biological Physics, Rice University, Houston, TX 77030, USA., Gingeras T; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA., Heath S; CNAG-CRG, Centre for Genomic Regulation (CRG), The Barcelona Institute of Science and Technology (BIST), Barcelona, Spain. Universitat Pompeu Fabra, Barcelona, Spain., Hirst M; Micheal Smith Laboratories, University of British Columbia, British Columbia, Canada., Kent WJ; Genomics Institute, School of Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, USA., Kundaje A; Dept. of Genetics, Dept. of Computer Science, Stanford University, 240 Pasteur Drive, Palo Alto, CA 94304, USA., Mortazavi A; Center for Complex Biological Systems, University of California, Irvine, Irvine, CA 92697, USA., Wold B; Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125 USA., Cherry JM; Department of Genetics, Stanford University School of Medicine, Stanford, CA 94305, USA.
Source: BioRxiv : the preprint server for biology [bioRxiv] 2023 Apr 06. Date of Electronic Publication: 2023 Apr 06.
Publication Type: Preprint; Journal Article
Journal Info: Country of Publication: United States NLM ID: 101680187 Publication Model: Electronic Cited Medium: Internet ISSN: 2692-8205 (Electronic) Linking ISSN: 26928205 NLM ISO Abbreviation: bioRxiv Subsets: PubMed not MEDLINE
Database: MEDLINE Ultimate
FullText Text:
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DbLabel: MEDLINE Ultimate
An: 37066421
AccessLevel: 2
PubType: Academic Journal
PubTypeId: academicJournal
PreciseRelevancyScore: 0
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      – PersonEntity:
          Name:
            NameFull: Eliaz Y
      – PersonEntity:
          Name:
            NameFull: Nguyen D
      – PersonEntity:
          Name:
            NameFull: Bochkov I
      – PersonEntity:
          Name:
            NameFull: Shamim MS
      – PersonEntity:
          Name:
            NameFull: Mahajan R
      – PersonEntity:
          Name:
            NameFull: Aiden E
      – PersonEntity:
          Name:
            NameFull: Gingeras T
      – PersonEntity:
          Name:
            NameFull: Heath S
      – PersonEntity:
          Name:
            NameFull: Hirst M
      – PersonEntity:
          Name:
            NameFull: Kent WJ
      – PersonEntity:
          Name:
            NameFull: Kundaje A
      – PersonEntity:
          Name:
            NameFull: Mortazavi A
      – PersonEntity:
          Name:
            NameFull: Wold B
      – PersonEntity:
          Name:
            NameFull: Cherry JM
    IsPartOfRelationships:
      – BibEntity:
          Dates:
            – D: 06
              M: 04
              Text: 2023 Apr 06
              Type: published
              Y: 2023
          Identifiers:
            – Type: issn-electronic
              Value: 2692-8205
          Titles:
            – TitleFull: BioRxiv : the preprint server for biology
              Type: main
ResultId 1