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Topologically associating domain boundaries are required for normal genome function.

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Title: Topologically associating domain boundaries are required for normal genome function.
Authors: Rajderkar S; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Barozzi I; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.; Center for Cancer Research, Medical University of Vienna, Borschkegasse 8a, 1090, Vienna, Austria.; Department of Surgery and Cancer, Imperial College London, London, UK., Zhu Y; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Hu R; Ludwig Institute for Cancer Research, La Jolla, CA, USA., Zhang Y; Ludwig Institute for Cancer Research, La Jolla, CA, USA., Li B; Ludwig Institute for Cancer Research, La Jolla, CA, USA., Alcaina Caro A; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide Junta de Andalucía, 41013, Seville, Spain., Fukuda-Yuzawa Y; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.; Institute of Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan., Kelman G; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.; The Jerusalem Center for Personalized Computational Medicine, Hebrew University of Jerusalem, Jerusalem, Israel., Akeza A; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Blow MJ; U.S. Department of Energy Joint Genome Institute, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Pham Q; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Harrington AN; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Godoy J; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Meky EM; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., von Maydell K; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Hunter RD; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Akiyama JA; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Novak CS; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Plajzer-Frick I; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Afzal V; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Tran S; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Lopez-Rios J; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide Junta de Andalucía, 41013, Seville, Spain., Talkowski ME; Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, 02114, USA.; Program in Medical and Population Genetics and Stanley Center for Psychiatric Disorders, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA, 02142, USA.; Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA., Lloyd KCK; Mouse Biology Program, University of California, Davis, Davis, CA, USA.; Department of Surgery, School of Medicine, University of California, Davis, Davis, CA, USA., Ren B; Ludwig Institute for Cancer Research, La Jolla, CA, USA.; Center for Epigenomics, University of California, San Diego School of Medicine, La Jolla, CA, USA.; Department of Cellular and Molecular Medicine, University of California, San Diego School of Medicine, La Jolla, CA, USA.; Institute of Genome Medicine, Moores Cancer Center, University of California, San Diego School of Medicine, La Jolla, CA, USA., Dickel DE; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA., Visel A; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA. avisel@lbl.gov.; U.S. Department of Energy Joint Genome Institute, 1 Cyclotron Road, Berkeley, CA, 94720, USA. avisel@lbl.gov.; School of Natural Sciences, University of California, Merced, Merced, CA, USA. avisel@lbl.gov., Pennacchio LA; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA. lapennacchio@lbl.gov.; U.S. Department of Energy Joint Genome Institute, 1 Cyclotron Road, Berkeley, CA, 94720, USA. lapennacchio@lbl.gov.; Comparative Biochemistry Program, University of California, Berkeley, CA, 94720, USA. lapennacchio@lbl.gov.
Source: Communications biology [Commun Biol] 2023 Apr 20; Vol. 6 (1), pp. 435. Date of Electronic Publication: 2023 Apr 20.
Publication Type: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info: Publisher: Nature Publishing Group UK Country of Publication: England NLM ID: 101719179 Publication Model: Electronic Cited Medium: Internet ISSN: 2399-3642 (Electronic) Linking ISSN: 23993642 NLM ISO Abbreviation: Commun Biol Subsets: MEDLINE
Database: MEDLINE Ultimate
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  Data: Topologically associating domain boundaries are required for normal genome function.
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  Data: <searchLink fieldCode="AU" term="%22Rajderkar+S%22">Rajderkar S</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Barozzi+I%22">Barozzi I</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.; Center for Cancer Research, Medical University of Vienna, Borschkegasse 8a, 1090, Vienna, Austria.; Department of Surgery and Cancer, Imperial College London, London, UK.<br /><searchLink fieldCode="AU" term="%22Zhu+Y%22">Zhu Y</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Hu+R%22">Hu R</searchLink>; Ludwig Institute for Cancer Research, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Zhang+Y%22">Zhang Y</searchLink>; Ludwig Institute for Cancer Research, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Li+B%22">Li B</searchLink>; Ludwig Institute for Cancer Research, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Alcaina+Caro+A%22">Alcaina Caro A</searchLink>; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide Junta de Andalucía, 41013, Seville, Spain.<br /><searchLink fieldCode="AU" term="%22Fukuda-Yuzawa+Y%22">Fukuda-Yuzawa Y</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.; Institute of Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan.<br /><searchLink fieldCode="AU" term="%22Kelman+G%22">Kelman G</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.; The Jerusalem Center for Personalized Computational Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.<br /><searchLink fieldCode="AU" term="%22Akeza+A%22">Akeza A</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Blow+MJ%22">Blow MJ</searchLink>; U.S. Department of Energy Joint Genome Institute, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Pham+Q%22">Pham Q</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Harrington+AN%22">Harrington AN</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Godoy+J%22">Godoy J</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Meky+EM%22">Meky EM</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22von+Maydell+K%22">von Maydell K</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Hunter+RD%22">Hunter RD</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Akiyama+JA%22">Akiyama JA</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Novak+CS%22">Novak CS</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Plajzer-Frick+I%22">Plajzer-Frick I</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Afzal+V%22">Afzal V</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Tran+S%22">Tran S</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Lopez-Rios+J%22">Lopez-Rios J</searchLink>; Centro Andaluz de Biología del Desarrollo (CABD), CSIC-Universidad Pablo de Olavide Junta de Andalucía, 41013, Seville, Spain.<br /><searchLink fieldCode="AU" term="%22Talkowski+ME%22">Talkowski ME</searchLink>; Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, 02114, USA.; Program in Medical and Population Genetics and Stanley Center for Psychiatric Disorders, Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, MA, 02142, USA.; Department of Neurology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, 02114, USA.<br /><searchLink fieldCode="AU" term="%22Lloyd+KCK%22">Lloyd KCK</searchLink>; Mouse Biology Program, University of California, Davis, Davis, CA, USA.; Department of Surgery, School of Medicine, University of California, Davis, Davis, CA, USA.<br /><searchLink fieldCode="AU" term="%22Ren+B%22">Ren B</searchLink>; Ludwig Institute for Cancer Research, La Jolla, CA, USA.; Center for Epigenomics, University of California, San Diego School of Medicine, La Jolla, CA, USA.; Department of Cellular and Molecular Medicine, University of California, San Diego School of Medicine, La Jolla, CA, USA.; Institute of Genome Medicine, Moores Cancer Center, University of California, San Diego School of Medicine, La Jolla, CA, USA.<br /><searchLink fieldCode="AU" term="%22Dickel+DE%22">Dickel DE</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA.<br /><searchLink fieldCode="AU" term="%22Visel+A%22">Visel A</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA. avisel@lbl.gov.; U.S. Department of Energy Joint Genome Institute, 1 Cyclotron Road, Berkeley, CA, 94720, USA. avisel@lbl.gov.; School of Natural Sciences, University of California, Merced, Merced, CA, USA. avisel@lbl.gov.<br /><searchLink fieldCode="AU" term="%22Pennacchio+LA%22">Pennacchio LA</searchLink>; Environmental Genomics & System Biology Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA. lapennacchio@lbl.gov.; U.S. Department of Energy Joint Genome Institute, 1 Cyclotron Road, Berkeley, CA, 94720, USA. lapennacchio@lbl.gov.; Comparative Biochemistry Program, University of California, Berkeley, CA, 94720, USA. lapennacchio@lbl.gov.
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